1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GATGACAACAGCCTTGCCACCTTCTCTGCCACTCAGCTCTCGATCTCCATTCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactcccggtaaatgcgcgtgaaaattttccattttgattcatcaattctgaagaacagttttattctgaacatcttcaaatcgttgcag
species | Oryza sativa |
transcript | LOC_Os04g51190.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCAATGGCAACCTCTGACTTCTGGACCACCAGCTCACGATCACACAACG ATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCGEST: gi|88957397|gb|CI095338.1|CI095338
genomic: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactc ... atcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
EST: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACG ATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCGEST: gi|58668873|gb|CK057559.1|CK057559
genomic: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactc ... atcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
EST: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACG ATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCGEST: gi|88961156|gb|CI096560.1|CI096560
genomic: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactc ... atcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
EST: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACG ATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCGEST: gi|86493048|gb|CI135681.1|CI135681
genomic: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactc ... atcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
EST: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACG ATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCGEST: gi|86505027|gb|CI147660.1|CI147660
genomic: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactc ... atcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
EST: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACG ATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCGEST: gi|88507970|gb|CI435476.1|CI435476
genomic: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactc ... atcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
EST: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACG ATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCGEST: gi|88905842|gb|CI002180.1|CI002180
genomic: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactc ... atcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
EST: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACG ATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
genomic: TCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactc ... atcgttgcagATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGACAACAGCCTTGCCACCTTCTCTGCCACTCAGCTCTCGATCTCCATTCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGgtatatactcccggtaaatgcgcgtgaaaattttccattttgattcatcaattctgaagaacagttttattctgaacatcttcaaatcgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA