1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGgtttgtaattagcatttttccttcttcacttcttgttttatatgatctatcaagacattcagttatctgatggatataacgattttatctattaatgccc...
species | Oryza sativa |
transcript | LOC_Os04g48820.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAG GTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTEST: gi|218500580|gb|FG960548.1|FG960548
genomic: TTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGgtttgtaatt ... atcactgcagGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCT
EST: TTGGTCTGGACAC-G-TTCACATGGAAAAACCATTGACTTTGGAGAACAG GTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTEST: gi|33794900|gb|CF323330.1|CF323330
genomic: TTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGgtttgtaatt ... atcactgcagGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCT
EST: TTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAG GTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTEST: gi|58689823|gb|CK078510.1|CK078510
genomic: TTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGgtttgtaatt ... atcactgcagGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCT
EST: TTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAG GTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTEST: gi|66921923|gb|CX108771.1|CX108771
genomic: TTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGgtttgtaatt ... atcactgcagGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCT
EST: TTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAG GTTGAAGTTT-CCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTEST: gi|88413444|gb|CI581459.1|CI581459
genomic: TTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGgtttgtaatt ... atcactgcagGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCT
EST: TTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAG GTTGAAGTTTTCCAGEST: gi|58690259|gb|CK078946.1|CK078946
genomic: TTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGgtttgtaatt ... atcactgcagGTTGAAGTTTTCCAG
EST: TTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAG GTTGAAGTTTTCCAGCAGCAACTTGAACTT
genomic: TTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGgtttgtaatt ... atcactgcagGTTGAAGTTTTCCAGCAGCAACTTGAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGgtttgtaattagcatttttccttcttcacttcttgttttatatgatctatcaagacattcagttatctgatggatataacgattttatctattaatgccc
- - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - GGAGAA