1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACCTGTTCATTTACTTGTTGGAACTCCTGGTCGCATTTTAGACCTTACAAAGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAGgtatatcattgtctgtcttgttttcatgtgttgttgctcctgttcttaagtaagatactctaatatcttttctaagtggcatctgaacataaaacaatag...
species | Oryza sativa |
transcript | LOC_Os04g45040.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAG GCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATTEST: gi|27554371|gb|CA998271.1|CA998271
genomic: AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAGgtatatcatt ... tctcttgcagGCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATT
EST: AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAG GCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATTEST: gi|33677782|gb|CF306021.1|CF306021
genomic: AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAGgtatatcatt ... tctcttgcagGCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATT
EST: AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAG GCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATTEST: gi|58684322|gb|CK073009.1|CK073009
genomic: AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAGgtatatcatt ... tctcttgcagGCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATT
EST: AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAG GCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATTEST: gi|163919907|gb|EG714909.1|EG714909
genomic: AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAGgtatatcatt ... tctcttgcagGCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATT
EST: AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAG GCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATT
genomic: AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAGgtatatcatt ... tctcttgcagGCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTGTTCATTTACTTGTTGGAACTCCTGGTCGCATTTTAGACCTTACAAAGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAGgtatatcattgtctgtcttgttttcatgtgttgttgctcctgttcttaagtaagatactctaatatcttttctaagtggcatctgaacataaaacaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC