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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGGGACTATGCTTTGGAAATGTGGAGGTTGCTCGATCCAGATTCAAGATTGATAAACTCTGTTCAACTTACTGACAGACTTGTCTGTGTTAAATCTGgtaggtgttagcattactattactttcaaacaacacaactaccaaaggaatatagtgtcatttggtatattttgtacaccgcaatcaatgttttgtgttgtctaatttccttcatacaaatttccatgtgcatgaacataatgtcttggaattttccatcttttgacgttaatgctacaccactcttatag

Basic information

species Oryza sativa
transcript LOC_Os04g44710.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g44710.2 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv00s0370g00040.t01 (Vitis vinifera), 5'ss of exon 3
GAGAGGGACTATGCTTTGGAAATGTGGAGGTTGCTCGATCCAGATTCAAGATTGATAAACTCTGTTCAACTTACTGACAGACTTGTCTGTGTTAAATCTGgtaggtgtt--agcattactattactttcaaacaacacaactacca-----aaggaatatagtgtcatttggtatattttgtacaccgcaatcaatgttttgtgttgtctaatttccttcatacaaatttccatgtgcatgaacataatgtcttggaattttccatcttttgacgttaatgctacaccactcttatag
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GAAAGGGATTATGCTTTGGAAATGTGGAGGCTTCTTGATCCAGAGTCAAATTTGATAAACTCAAAAGAATTGTTGGATCGCATTGTGTGCGTGAAGTCTGgtaagtttttaaaagaaatggttgatcttagggatgacttatgccatccacagcagaccaaagacaagctaattaattatata-gcttctgatatgattttttttcacccattcttgtagttgttacttgttat-tctgtaaaccacgtacatt---atcctcaatatcctacttattttctttattaaatttgatag