1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TACCGCCATTGATATGTGGTCTGTGGGCTGCATAATGGCAGAGCTTTTGGCCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAGgtatttcgtttgacttgtgattttgcatccttgcaattactatatttttttcagaggtctcatgttggatttcctttcctgttgcagatacctataaaccttgatatatattatatttgatcatatctcatggtgaagctacttttattgcag
species | Oryza sativa |
transcript | LOC_Os04g41100.6 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGC----T-AG ATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCCEST: gi|29640024|gb|CB645033.1|CB645033
genomic: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAGgtatttcgtt ... tttattgcagATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCC
EST: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAG ATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCCEST: gi|29672610|gb|CB668885.1|CB668885
genomic: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAGgtatttcgtt ... tttattgcagATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCC
EST: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAG ATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCCEST: gi|58687429|gb|CK076116.1|CK076116
genomic: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAGgtatttcgtt ... tttattgcagATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCC
EST: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAG ATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCCEST: gi|29679248|gb|CB675523.1|CB675523
genomic: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAGgtatttcgtt ... tttattgcagATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCC
EST: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAG ATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCC
genomic: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAGgtatttcgtt ... tttattgcagATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCGCCATTGATATGTGGTCTGTGGGCTGCATAATGGCAGAGCTTTTGGCCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAGgtatttcgtttgacttgtgattttgcatccttgcaattactatatttttttcagaggtctcatgttggatttcctttcctgttgcagatacctataaaccttgatatatattatatttgatcatatctcatggtgaagctacttttattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC