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ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgttgtttgtaatgtaaccaccattttgtgatgcgcacacgtcattatgataaatttctttttcag
species | Oryza sativa |
transcript | LOC_Os04g40874.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATACCTCAAAGGAGCCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTC-TATGACAGCGGAGAAGGATTTGAGAAATTGEST: gi|29663317|gb|CB659592.1|CB659592
genomic: ATACCTCAAAGGAGCC-TCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTG
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTGEST: gi|88313812|gb|CI597443.1|CI597443
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTG
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTC-TATGACAGCGGAGAAGGATTTGAGEST: gi|88449978|gb|CI572109.1|CI572109
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAG
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTCCTATGACAGCGEST: gi|58654814|gb|CK043494.1|CK043494
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCG
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTGEST: gi|88719764|gb|CI743274.1|CI743274
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTG
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTCCTATGAEST: gi|58611861|gb|CK039573.1|CK039573
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGA
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTGEST: gi|88388045|gb|CI590321.1|CI590321
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTG
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTEST: gi|88407965|gb|CI588994.1|CI588994
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGT
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTCCTATGEST: gi|88430411|gb|CI567430.1|CI567430
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATG
EST: ATACC-CAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTGEST: gi|88409948|gb|CI571205.1|CI571205
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTG
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTCCTATGAEST: gi|29634314|gb|CB639323.1|CB639323
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGA
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTGEST: gi|29614696|gb|CB619709.1|CB619709
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTG
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTGEST: gi|88396043|gb|CI595591.1|CI595591
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTG
EST: ATAC-TCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGGAACAT ATAAAATATGTEST: gi|88421686|gb|CI569067.1|CI569067
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGT
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTCCTATGAGAGCGGAGAAGGATTTGAGAAATTGEST: gi|58608815|gb|CK036848.1|CK036848
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTG
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTGEST: gi|58670061|gb|CK058747.1|CK058747
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTG
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTGEST: gi|29680803|gb|CB677078.1|CB677078
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTG
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTGEST: gi|29635386|gb|CB640395.1|CB640395
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTG
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTTAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTGEST: gi|88363865|gb|CI607175.1|CI607175
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTG
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAAAAT ATAAAATATGTCAGTGGTTCCTATGAGAGCGGAGAAGGATTTGAEST: gi|163920079|gb|EG712021.1|EG712021
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGA
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTCCTATEST: gi|117243651|gb|CT843162.1|CT843162
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTAT
EST: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACAT ATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTG
genomic: ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgtt ... tctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACCTCAAAGGAGCCTCAGAAGAACATCTCTCAGACTTTTTGCAACATgtgagttgttgtttgtaatgtaaccaccattttgtgatgcgcacacgtcattatgataaatttctttttcag
- - - - AAGGAG
- - - - - - - - - - AAGAAC