1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGTTGGACGTGTAACAGAATGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAGgtttttgctctttgactttttgtggttgctcatattttcccctctactttgcaccgctggcagccaagccaaggaactttctattgttgaagttcatgtg...
species | Oryza sativa |
transcript | LOC_Os04g37660.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAGAATGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAG ATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATTEST: gi|40490361|gb|BX899888.1|BX899888
genomic: CAGAATGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAGgtttttgctc ... gtccatacagATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATT
EST: CAGAATGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAG ATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCCATCAAGATCAATTEST: gi|27547836|gb|CA765984.2|CA765984
genomic: CAGAATGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAGgtttttgctc ... gtccatacagATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATT
EST: CAGAACGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAG ATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATTEST: gi|58673154|gb|CK061840.1|CK061840
genomic: CAGAATGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAGgtttttgctc ... gtccatacagATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATT
EST: CAGAATGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAG ATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGEST: gi|58605846|gb|CK033879.1|CK033879
genomic: CAGAATGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAGgtttttgctc ... gtccatacagATTGGGCCACTTAGATGTTGGCCTGGTGGCTTG
EST: GGCTAAATGTTGTCGGCGGAGCTGAG ATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATT
genomic: GGCTAAATGTTGTCGGCGGAGCTGAGgtttttgctc ... gtccatacagATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGGACGTGTAACAGAATGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAGgtttttgctctttgactttttgtggttgctcatattttcccctctactttgcaccgctggcagccaagccaaggaactttctattgttgaagttcatgtg
- - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA