1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAAATAGATATGCTTAGGCAACTTTCGCACCCAAACATTGTGCAGTACTATGGAAGTGAGATGgtaagctttacttgataaacaattgcatttatctctgtgcaactatatataacttcaatacatgtttgtaactaccatgttgtctgttacatgcatgact...
species | Oryza sativa |
transcript | LOC_Os04g35700.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTAGGCAACTTTCGCACCCAAACATTGTGCAGTACTATGGAAGTGAGATG ACTGATGATGCACTTTCAATTTATCTGGAGTTTGTTTCTGGGGGCTCAATTEST: gi|33684300|gb|CF312539.1|CF312539
genomic: TTAGGCAACTTTCGCACCCAAACATTGTGCAGTACTATGGAAGTGAGATGgtaagcttta ... ttccatgcagACTGATGATGCACTTTCAATTTATCTGGAGTTTGTTTCTGGGGGCTCAATT
EST: AGGCAACTTTCGCACCCAAACATTGTGCAGTACTATGGAAGTGAGATG ACTGATGATGCACTTTCAATTTATCTGGAGTTTGTTTCTGGGGGCTCAATTEST: gi|58695587|gb|CK084274.1|CK084274
genomic: AGGCAACTTTCGCACCCAAACATTGTGCAGTACTATGGAAGTGAGATGgtaagcttta ... ttccatgcagACTGATGATGCACTTTCAATTTATCTGGAGTTTGTTTCTGGGGGCTCAATT
EST: TTAGGCAACTTTCGCACCCAAACATTGTGCAGTACTATGGAAGTGAGATG ACTGATGATGCACTTTCAATTTATCTGGAGTTTGTTTCTGGGGGCTCAATTEST: gi|29629684|gb|CB634693.1|CB634693
genomic: TTAGGCAACTTTCGCACCCAAACATTGTGCAGTACTATGGAAGTGAGATGgtaagcttta ... ttccatgcagACTGATGATGCACTTTCAATTTATCTGGAGTTTGTTTCTGGGGGCTCAATT
EST: TAGGCAACTTTCGCACCCAAACTCTTGTGCAGTACTATGGAAGTGAGATG ACTGATGATGCACTTTCAATTTATCTGGAGTTTGTTTCTGGGGGCTCAATTEST: gi|29629743|gb|CB634752.1|CB634752
genomic: TAGGCAACTTTCGCACCCAAAC-ATTGTGCAGTACTATGGAAGTGAGATGgtaagcttta ... ttccatgcagACTGATGATGCACTTTCAATTTATCTGGAGTTTGTTTCTGGGGGCTCAATT
EST: TTAGGCAACTTTCGCACCCAAACATTGTGCAGTACTATGGAAGTGAGATG ACTGATGATGCACTTTCAATTTATCTGGAGTTTGTTTCTGGGGGCTCAATT
genomic: TTAGGCAACTTTCGCACCCAAACATTGTGCAGTACTATGGAAGTGAGATGgtaagcttta ... ttccatgcagACTGATGATGCACTTTCAATTTATCTGGAGTTTGTTTCTGGGGGCTCAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATAGATATGCTTAGGCAACTTTCGCACCCAAACATTGTGCAGTACTATGGAAGTGAGATGgtaagctttacttgataaacaattgcatttatctctgtgcaactatatataacttcaatacatgtttgtaactaccatgttgtctgttacatgcatgact
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG