1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGCCAGGTGTCTCATAAATGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGgtacccaatgttccccttatgatcaaatacaagtttatcaggaaatcgcaaagtctatttacagtgttcatttcaccttcctattcatttcattctgcgtccaatttgacttattgaggaattgattgttgattttcag
species | Oryza sativa |
transcript | LOC_Os04g31690.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGC--G-A- G--C-AGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTCEST: gi|86522333|gb|CI162539.1|CI162539
genomic: AGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGgtacccaatg ... tgattttcagGTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTC
EST: AGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAG GTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTCEST: gi|313079778|gb|HO213217.1|HO213217
genomic: AGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGgtacccaatg ... tgattttcagGTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTC
EST: GTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAG GTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTCEST: gi|86887856|gb|CI297967.1|CI297967
genomic: GTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGgtacccaatg ... tgattttcagGTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTC
EST: AGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAG GTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTCEST: gi|38474121|gb|CF958253.1|CF958253
genomic: AGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGgtacccaatg ... tgattttcagGTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTC
EST: TTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAG TTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTCEST: gi|58594719|gb|CF993027.1|CF993027
genomic: TTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGgtacccaatg ... tgattttcagGTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTC
EST: AGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAG GTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTCEST: gi|27546938|gb|CA767312.2|CA767312
genomic: AGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGgtacccaatg ... tgattttcagGTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTC
EST: AGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAG GTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTC
genomic: AGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGgtacccaatg ... tgattttcagGTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCAGGTGTCTCATAAATGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGgtacccaatgttccccttatgatcaaatacaagtttatcaggaaatcgcaaagtctatttacagtgttcatttcaccttcctattcatttcattctgcgtccaatttgacttattgaggaattgattgttgattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG