Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGTGAGATTGGCAACCCATGCAAACTTTAAGGAGTTCGTTCTAACGGCTGGTCTGGAGTTTTTCCCTCTTGGCGGTGATCCAAAAATACTTGCTGAATgtatgaaaataaatccttgtattcacatagttgattttttttcagtttctacgtcacgatgattaatatatttggtatattcatatttgagcag

Basic information

species Oryza sativa
transcript LOC_Os04g04254.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g04254.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G007721_T01 (Zea mays), 5'ss of exon 2
CGTGTGAGATTGGCAACCCATGCAAACTTTAAGGAGTTCGTTCTAACGGCTGGTCTGGAGTTTTTCCCTCTTGGCGGTGATCCAAAAATACTTGCTGAATgtatgaaaataaatccttgtattcacatagttgattttttttcagtttctacgtcacgatgattaatatatttggtatattcata-tttgagcag
|||||||||||||| || ||||| |||||||||||||| || ||||| ||||| ||||||||||| || ||||| || ||||| ||||| |||||||||||||||    | ||   | || ||||   ||||  |||||||  | | | |       || ||| || || |||| ||| |||||| |||||||||
CGTGTGAGATTGGCCACTCATGCCAACTTTAAGGAGTTTGTACTAACAGCTGGCCTGGAGTTTTTTCCGCTTGGTGGAGATCCCAAAATTCTTGCTGAATgtatgttttttaaaagtagttttca---agtt--tttttttataatattt-------gaagataaacatgtttgatatgttcataatttgagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29623072|gb|CB628083.1|CB628083
EST:     TGGTCTGGAGTTTTTCCCTCTTGGCGGTGATCCAAAAATACTTGCTGAAT                         ACATGGTGAAGAATAAAGGATTCTTGCCTTCTGGTCCTTCAGAAATTCCTA
genomic: TGGTCTGGAGTTTTTCCCTCTTGGCGGTGATCCAAAAATACTTGCTGAATgtatgaaaat ... atttgagcagACATGGTGAAGAATAAAGGATTCTTGCCTTCTGGTCCTTCAGAAATTCCTA