1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCAAAGAGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaagctgcactataatcatggcacacagttacatctactataaccaccatagtgttgtcttcgcatctacataatgtctaacaagttcatcctcag
species | Oryza sativa |
transcript | LOC_Os03g63430.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAEST: gi|29664786|gb|CB661061.1|CB661061
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: TTAATGCAAGAAGTTGCT G-TGAAACATTNTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTEST: gi|58681663|gb|CK070350.1|CK070350
genomic: TTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATT-TGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCT
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCTTTCATTCEST: gi|58685186|gb|CK073873.1|CK073873
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTC
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCTTTCATTCTAEST: gi|33812345|gb|CF332062.1|CF332062
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAEST: gi|88265103|gb|CI368877.1|CI368877
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAEST: gi|29664482|gb|CB660757.1|CB660757
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAEST: gi|88210956|gb|CI212596.1|CI212596
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAEST: gi|29645308|gb|CB650315.1|CB650315
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GGTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAEST: gi|58694542|gb|CK083229.1|CK083229
genomic: AGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCTTTCATEST: gi|58681237|gb|CK069924.1|CK069924
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCAT
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCTTTCATTCTAEST: gi|29645307|gb|CB650314.1|CB650314
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAEST: gi|33795887|gb|CF323811.1|CF323811
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAEST: gi|29658196|gb|CB654471.1|CB654471
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAEST: gi|29664785|gb|CB661060.1|CB661060
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAEST: gi|58659555|gb|CK048235.1|CK048235
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCTTTCATTCTAEST: gi|58593588|gb|CF991896.1|CF991896
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCTTTCATTCTAEST: gi|29639941|gb|CB644950.1|CB644950
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTEST: gi|29678374|gb|CB674649.1|CB674649
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCT
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAEST: gi|58678571|gb|CK067258.1|CK067258
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCTTTCATTCTAEST: gi|86495227|gb|CI137860.1|CI137860
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGEST: gi|29637544|gb|CB642553.1|CB642553
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATG
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAEST: gi|117217926|gb|CT845200.1|CT845200
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCTTTCATTCTAEST: gi|86534283|gb|CI174489.1|CI174489
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAEST: gi|19388435|gb|BM929262.1|BM929262
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
EST: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCT GTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCTTTCATTCTA
genomic: AGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaa ... tcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCAAAGAGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAGTTGCTgtaagttcaagctgcactataatcatggcacacagttacatctactataaccaccatagtgttgtcttcgcatctacataatgtctaacaagttcatcctcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT