1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAAGAGATGGCATCAGCAAAAGCAACGAGTGGAGCAGCTGTGCTTGTCTCTCGAACCTTACCTCGCCAATCTTCAGCTGTCTAGCGCATTGTTCAAGTGgtaaggaagtttactaatttttggttgcattgcaagtttgaggtagtggcttctaatgtatgaatccacctcatttgttag
species | Oryza sativa |
transcript | LOC_Os03g62730.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCGAACCTTACCTCGCCAATCTTCAGCTGTCTAGCGCATTGTTCAAGTG GTCCTTGGAGATTCAAAAAGCACTGTACAGGATTGAACTGTACAGACAAGGEST: gi|86835542|gb|CI347999.1|CI347999
genomic: CTCGAACCTTACCTCGCCAATCTTCAGCTGTCTAGCGCATTGTTCAAGTGgtaaggaagt ... catttgttagGTCCTTGGAGATTCAAAAAGCACTGTACAGGATTGAACTGTACAGACAAGG
EST: CTCGAACCTTACCTCGCCAATCTTCAGCTGTCTAGCGCATTGTTCAAGTG GTCCTTGGAGATTCAAAAAGCACTGTACAGGATTGAACTGTACAGACAAGGEST: gi|8527217|gb|AU092032.1|AU092032
genomic: CTCGAACCTTACCTCGCCAATCTTCAGCTGTCTAGCGCATTGTTCAAGTGgtaaggaagt ... catttgttagGTCCTTGGAGATTCAAAAAGCACTGTACAGGATTGAACTGTACAGACAAGG
EST: CTCGAACCTTACCTCGCCAATCTTCAGCTGTCTAGCGCATTGTTCAAGTG GTCCTTGGAGATTCAAAAAGCACTGTACAGGATTGAACTGTACAGACAAGGEST: gi|88998115|gb|CI038000.1|CI038000
genomic: CTCGAACCTTACCTCGCCAATCTTCAGCTGTCTAGCGCATTGTTCAAGTGgtaaggaagt ... catttgttagGTCCTTGGAGATTCAAAAAGCACTGTACAGGATTGAACTGTACAGACAAGG
EST: CTCGAACCTTACCTCGCCAATCTTCAGCTGTCTAGCGCATTGTTCAAGTG GTCCTTGGAGATTCAAAAAGCACTGTACAGGATTGAACTGTACAGACAAGGEST: gi|89177886|gb|CI391065.1|CI391065
genomic: CTCGAACCTTACCTCGCCAATCTTCAGCTGTCTAGCGCATTGTTCAAGTGgtaaggaagt ... catttgttagGTCCTTGGAGATTCAAAAAGCACTGTACAGGATTGAACTGTACAGACAAGG
EST: CAATCTTCAGCTGTCTAGCGCATTGTTCAAGTG GTCCTTGGAGATTCAAAAAGCACTGTACAGGATTGAACTGTACAGACAAGGEST: gi|29628052|gb|CB633063.1|CB633063
genomic: CAATCTTCAGCTGTCTAGCGCATTGTTCAAGTGgtaaggaagt ... catttgttagGTCCTTGGAGATTCAAAAAGCACTGTACAGGATTGAACTGTACAGACAAGG
EST: CTCGAACCTTACCTCGCCAATCTTCAGCTGTCTAGCGCATTGTTCAAGTG GTCCTTGGAGATTCAAAAAGCATTGTACAGGATTGAACTGTACAGACAAGGEST: gi|88271300|gb|CI387353.1|CI387353
genomic: CTCGAACCTTACCTCGCCAATCTTCAGCTGTCTAGCGCATTGTTCAAGTGgtaaggaagt ... catttgttagGTCCTTGGAGATTCAAAAAGCACTGTACAGGATTGAACTGTACAGACAAGG
EST: CTCGAACCTTACCTCGCCAATCTTCAGCTGTCTAGCGCATTGTTCAAGTG GTCCTTGGAGATTCAAAAAACACTGTACAGGATTGAACTGTACAGACAAGGEST: gi|88259193|gb|CI363486.1|CI363486
genomic: CTCGAACCTTACCTCGCCAATCTTCAGCTGTCTAGCGCATTGTTCAAGTGgtaaggaagt ... catttgttagGTCCTTGGAGATTCAAAAAGCACTGTACAGGATTGAACTGTACAGACAAGG
EST: AATCTTCAGCTGTCTAGCGCATTGTTCAAGTG GTCCTTGGAGATTCAAAAAGCACTGTACAGGATTGAACTGTACAGACAAGG
genomic: AATCTTCAGCTGTCTAGCGCATTGTTCAAGTGgtaaggaagt ... catttgttagGTCCTTGGAGATTCAAAAAGCACTGTACAGGATTGAACTGTACAGACAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGAGATGGCATCAGCAAAAGCAACGAGTGGAGCAGCTGTGCTTGTCTCTCGAACCTTACCTCGCCAATCTTCAGCTGTCTAGCGCATTGTTCAAGTGgtaaggaagtttactaatttttggttgcattgcaagtttgaggtagtggcttctaatgtatgaatccacctcatttgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG