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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCAAAGTTCATTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaagatgcaatggattatttctggtttagatggctttcaccatattccttgataagtttactacctgtagttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacag

Basic information

species Oryza sativa
transcript LOC_Os03g62490.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g62490.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AC217358.3_FGT005 (Zea mays), 5'ss of exon 4
AATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCAAAGTTCATTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaagatgcaatggattatttctggtttagatggctttcaccatattccttgataagtttactacctgta-gttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacag
 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| | |||||  | ||||| |||||||| ||     |  |         ||||| || ||   |  ||      | |  || || |    ||  || |  | |    |   | || ||  | ||| |   ||| |                                                                                 
CATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCCAAGTTCATTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgttagtggccaccc---------tttcttgtgtaagagtgttcttttgtctggctggaaacaagtaaaacttacaaggaaaaaaaagaaatgccatgactt--taatcgtg-------------------------------------------------------------------------------

upper sequence: LOC_Os03g62490.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA09G30410.1 (Glycine max), 5'ss of exon 6
AATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCAAAGTTCATTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaagatgcaatggattatttctggtttagatg--gctttcaccatattccttgata-agtttactacctgtagttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacag
||||||||| |||||||| |||||||||||||||||| | || || ||  |||| || || ||||| ||||||||||| |||||  | |||||||||||||| |           ||  ||| |||   |  ||||||  | |  |||  |  | |||  || |  || || |   |  || || |  ||||     |    ||| || |                                                                                  
AATTGAAGCAAAGCAGGTAGCTGCACAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAGCAAGACAAGAGAAGTGCTGTAATCAGAGCACAGgtga---------tgataaatt-tttaatgcatagatgcagttaacactgtggtgcttagtacaagtttctgctaatt-ttatatttccaatacagcatgtgtattaagga---------------------------------------------------------------------------------

upper sequence: LOC_Os03g62490.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 5
AATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCAAAGTTCATTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaagatgcaatggattatttctggtttagatggctttcaccatattcct---tgataagtttactacctgtagttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacag
 |||||||||||||| |||||||| |||||||||||| | || || ||  |||| || || |||||||||||||| || |||||  | || ||||| |||||||  | || ||        | |||    || ||| |  | | |  || |       ||   |   ||||   | |  |||  |  |    |   ||| |||                                                                                         
TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatagttgtccca---tttttacatttaagaggattcttaatatttctacaactggctaccatactttttattatttctg-aattgctaccaagccatg----------------------------------------------------------------------------------------

upper sequence: LOC_Os03g62490.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA13G36940.1 (Glycine max), 5'ss of exon 5
AATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCAAAGTTCATTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaagatgcaatggattatttctggtttagatg--gctttcaccatattccttgataagtttactacctgtagttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacag
||||||||| |||||||| |||||||||||||||||  | || || ||  |||| || || ||||| ||||||||||| |||||  | || ||||||||||| |         | ||  ||| |||   |  ||||||  | |  |||  |  | |||  ||    |     ||    || || |  ||||     |    ||| || |                                                                                  
AATTGAAGCAAAGCAGGTAGCTGCACAAGAAGCTGACAGGGCTAAATTTGTTGTAGAAAAAGCTGAGCAAGACAAGAGAAGTGCTGTAATTAGAGCACAGgtga---------cgataaatt-tttaatgcatagatgcagttaacactgtggtgcttagtacaagtttcttctaattttatatttccaatacagtatgtgtattaagga---------------------------------------------------------------------------------

upper sequence: LOC_Os03g62490.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA12G01850.1 (Glycine max), 5'ss of exon 4
AATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCAAAGTTCATTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaagatgcaatggattatttctggtttagatggctttcaccatattccttgataagtttactacctgtagttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacag
 ||||||||||||||||||||||| |||||||||||| | || || ||  |||| || || ||||||||||||||    |||||  | || ||||| |||||||  | || ||       |||  |    || |||||  | | |  ||||| ||  |   |  ||    ||    |  |  |   | || | ||    || |||                                                                                    
TATTGAAGCCAAGCAGGTTGCTGCTCAAGAAGCTGAGAGAGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAACAAAGTGCTGTTATTAGAGCTCAGgtaaaaatagttgtcccattttacat----ttaagatgattctta--atatttctacaagtggctatgggctaccatacttttattatttctgaattgctaccaaa-----------------------------------------------------------------------------------

upper sequence: LOC_Os03g62490.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA12G33520.1 (Glycine max), 5'ss of exon 5
AATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCAAAGTTCATTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaagatg--caatggattatttctggtttagatggctttcaccatattccttgataagtttactacctgtagttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacag
||||||||| |||||||| |||||||||||||||||| | || || ||  |||| || || ||||| ||||||||||| |||||  | || ||||||||||| |  | | ||    |||| ||   | | | |     |||   | |  | |    |    || |||   |  |  | |     |      | |||||  |                                                                                          
AATTGAAGCTAAGCAGGTAGCTGCACAAGAAGCTGAGAGGGCTAAATTTGTTGTGGAAAAAGCTGAGCAAGACAAGAGAAGTGCTGTAATTAGAGCACAGgtgatgataaattattaatgcatagatgcagttaacactggtgcttagtacaagtttctgcaaattttacatttccaatacagtttgtg--tattaaggaaa-----------------------------------------------------------------------------------------

upper sequence: LOC_Os03g62490.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT4G28510.1 (Arabidopsis thaliana), 5'ss of exon 5
AATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCAAAGTTCATTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaagatgcaatggatt---atttctggtttagatggctttcaccatattccttgataagtttactacctgtagttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacag
 |||||||| |||||||| || || ||||| |||||||| || |||||||||||||||||||| |||||||||||||| |||||  | ||| | || |||||||  | |||| |  |  |||   | || |  | || |         | | |||  |   | |    | | |   | | ||  ||                                                                                                          
CATTGAAGCAAAGCAGGTGGCGGCTCAAGAGGCTGAGCGGGCTAAGTTCATTGTTGAGAAGGCCGAACAAGACAAGAGAAGTGCTGTTATCCGCGCCCAGgtaa--agagattctctacatttccacttgtaatctaaactctgagagcgaaattgttgtgtgacgaaagttcacatggcttgtgtag--------------------------------------------------------------------------------------------------------

upper sequence: LOC_Os03g62490.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT2G20530.2 (Arabidopsis thaliana), 5'ss of exon 6
AATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCAAAGTTCATTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaagatgcaatggattatttc-tggtttagatggctttcaccatattccttgataagtttactacctgtagttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacag
 || ||||  |||||||| ||||| ||||| || || || || ||||||||||| ||||| |||||||| |||||||| |||||  | ||| | ||  ||||  | ||||      |   || | |     |||| |   |    |   | ||      |   |||  |     |  || | ||||    | ||||  | |   ||  |       | ||||| ||| | || || ||                                                    
CATAGAAGGAAAGCAGGTCGCTGCTCAAGAGGCCGAACGGGCTAAGTTCATTGTCGAGAAAGCTGAACAGGACAAGAGAAGTGCTGTTATCCGCGCCGAGgtgtgaaaagtgtttctctcttttctagcattttaaaaaccggagattgtgttaaagcttgcttttttttttcttttttgttgtgaactattttaaagcttgctaactga------tgtttctgcatgggtttatgtag---------------------------------------------------

upper sequence: LOC_Os03g62490.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT1G03860.3 (Arabidopsis thaliana), 5'ss of exon 5
AATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCAAAGTTCATTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgta-agcaaagatgcaatggattatt--tctggtttagatggctttcaccatattc-cttgataagtttactacctgt-agttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacag
 || || || || || |||||||| || |||||||| || || ||||||||||| ||||| || |||||||||| ||| |||||| | ||| | || |||||| ||||  | ||   | ||||     |||  |  | |||   ||     | ||  | |||    ||  ||   | | | | || ||| ||                                                                                                      
TATCGAGGCAAAACAAGTTGCTGCTCAGGAAGCTGAACGGGCTAAGTTCATTGTGGAGAAAGCCGAACAAGACAGGAGAAGTGCGGTTATCCGTGCGCAGgtatagcattggtgatcttgattgcaaatctaatg-acatgagattagtggttttggcctgaagcattagctctttttgaatctttgtg-cag-----------------------------------------------------------------------------------------------------

upper sequence: LOC_Os03g62490.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv19s0085g00730.t01 (Vitis vinifera), 5'ss of exon 6
AATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCAAAGTTCATTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaagatgcaatggattatttctggtttagatggctttcaccatattccttgataagtttactacc-tgtagttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacag
 |||||||| || || || ||||||||||| |||||  | || || ||  |||| || || ||||| ||||||||||||||||| || |||||||||||||| || ||| |   || ||   ||   ||   |||         | | |  |      | |   | || |  ||| ||| |         | ||    |||                                                                                         
TATTGAAGCTAAACAAGTGGCTGCACAAGAGGCTGAAAGGGCCAAATTTGTTGTGGAAAAAGCTGAGCAAGACAAGAGGAGTGCTATTATCAGAGCACAGgtgag-aaataaaaaacggtccatccatgccctaggaaatgcagatctttgtttccatttaagctgctgcagtgttgttctgaactaggattttctaccat-----------------------------------------------------------------------------------------

upper sequence: LOC_Os03g62490.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv15s0048g02350.t01 (Vitis vinifera), 5'ss of exon 6
AATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCAAAGTTCATTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaagatgcaatggattatttctggtttagatggctttcaccatattccttgataagtttactacctgtagttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacag
 ||||| || || || || |||||||||||||||||  | || || ||  |||| || || ||||| |||||||||| |||||| || |||||||||||||| || ||| |   |||||   ||   |    ||          | | |  |      | |   | || |  ||  | | |   |  ||| |    |   ||                                                                                       
TATTGAGGCTAAACAAGTGGCTGCACAAGAAGCTGAAAGGGCCAAATTTGTTGTGGAAAAAGCTGAGCAAGACAAGAAGAGTGCTATTATCAGAGCACAGgtgag-aaataaaaaatggtccatccataccctaagaaatgcaaatctttgtttccatttaagctgctgca-gtgttctgaactaggattttctgcaaccat---------------------------------------------------------------------------------------

upper sequence: LOC_Os03g62490.1 (Oryza sativa), 5'ss of exon 4
lower sequence: PP1S144_113V6.1 (Physcomitrella patens), 5'ss of exon 2
AATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCAAAGTTCATTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaagatgcaatggattatttctggtttagatggctttcaccatattccttgataagtttactacctgtagttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacag
  | ||||||||||| |||||||| ||||| |||||| |||| |||||  | || ||||| ||||||||||||||  | ||||| || ||  | || |||||  ||          || ||| |||| | | |     | ||      || |  || ||     |      | | ||  |      |  | || |    |  || | |   | | |  || |  || |  |    |  || ||| |    ||| |   || ||| |   | ||  |  |   | |    
TTTCGAAGCCAAGCAAGTTGCTGCTCAAGAGGCTGAGAGTGCCAAGTTTGTAGTGGAGAAAGCTGAACAAGACAAACGAAGTGCTATTATTCGTGCTCAGgt--gctttagccatttgtattgtttcagttat-----gtttctgaggtagtttttaatggagat------tatcgtcct--ccgaagcttttgatgt-tggcatttggtttctcttcttttgaatagagtagcgtcattaattgtgaaaggttt---ttaagtttcttt-tgttgtatatctcag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86503331|gb|CI145964.1|CI145964
EST:     TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCCCAG                         GGTGAGGCTAAGAGTGCACACCTGATTGGTGAGGCGATTAACAACAACCCT
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: gi|87035040|gb|CI189664.1|CI189664
EST:     TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAG                         GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: gi|89173097|gb|CI040990.1|CI040990
EST:     TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAG                         GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: gi|27578329|gb|CB001024.1|CB001024
EST:     TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAG                         GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: gi|89180145|gb|CI044424.1|CI044424
EST:     TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAG                         GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: gi|86855734|gb|CI269061.1|CI269061
EST:     TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAG                         GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: gi|89174055|gb|CI041948.1|CI041948
EST:     TCATCAGAGCACAG                         GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
genomic: TCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: gi|88837135|gb|CI078495.1|CI078495
EST:     CGATCATCAGAGCACAG                         GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
genomic: CGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: gi|27576639|gb|CA999333.1|CA999333
EST:     TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAG                         GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: gi|87028654|gb|CI266053.1|CI266053
EST:     AGTGCGATCATCAGAGCACAG                         GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
genomic: AGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: gi|27577573|gb|CB000268.1|CB000268
EST:     TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAG                         GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: gi|88844069|gb|CI001126.1|CI001126
EST:     TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAG                         GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 41 (downstream exon)
Score: 6

AATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCAAAGTTCATTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCTGCCTTCCTCGCTCTCCGACAGATTGAAGCTGCCAGGGAGATCTCTCACA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCAAAGTTCATTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaagatgcaatggattatttctggtttagatggctttcaccatattccttgataagtttactacctgtagttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA