1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGGACCTGTTGGCCTTGATGTAGTTGTTGATGGCACAGTTCCTACAGgtatatttttgatattttgttttgggattctttcacttccaaataataagcatgttaagtttgacatgattgcgtgttgttactcttatgtag
species | Oryza sativa |
transcript | LOC_Os03g61710.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGGTGGACCTGTTGGCCTTGATGTAGTTGTTGATGGCACAGTTCCTACAG GATCTGGACTTTCAAGCTCAGCAGCATTTGTCTGTTCAGCAACAATTGCTAEST: gi|29681133|gb|CB677408.1|CB677408
genomic: GGGTGGACCTGTTGGCCTTGATGTAGTTGTTGATGGCACAGTTCCTACAGgtatattttt ... tcttatgtagGATCTGGACTTTCAAGCTCAGCAGCATTTGTCTGTTCAGCAACAATTGCTA
EST: GGGTGGACCTGTTGGCCTTGATGTAGTTGTTGATGGCACAGTTCCTACAG GATCTGGACTTTCAAGCTCAGCAGCATTTGTCTGTTCAGCAACAATTGCTAEST: gi|58695416|gb|CK084103.1|CK084103
genomic: GGGTGGACCTGTTGGCCTTGATGTAGTTGTTGATGGCACAGTTCCTACAGgtatattttt ... tcttatgtagGATCTGGACTTTCAAGCTCAGCAGCATTTGTCTGTTCAGCAACAATTGCTA
EST: GGGTGGACCTGTTGGCCTTGATGTAGTTGTTGATGGCACAGTTCCTACAG GATCTGGACTTTCAAGCTCAGCAGCATTTGTCTGTTCAGCAACAATTGCTAEST: gi|40493179|gb|BX900637.1|BX900637
genomic: GGGTGGACCTGTTGGCCTTGATGTAGTTGTTGATGGCACAGTTCCTACAGgtatattttt ... tcttatgtagGATCTGGACTTTCAAGCTCAGCAGCATTTGTCTGTTCAGCAACAATTGCTA
EST: GGGTGGACCTGTTGGCCTTGATGTAGTTGTTGATGGCACAGTTCCTACAG GATCTGGACTTTCAAGCTC
genomic: GGGTGGACCTGTTGGCCTTGATGTAGTTGTTGATGGCACAGTTCCTACAGgtatattttt ... tcttatgtagGATCTGGACTTTCAAGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGGACCTGTTGGCCTTGATGTAGTTGTTGATGGCACAGTTCCTACAGgtatatttttgatattttgttttgggattctttcacttccaaataataagcatgttaagtttgacatgattgcgtgttgttactcttatgtag
- - - - - - - - - - - - - - - - - - - - - - - GGTGGA