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GAAACTACTTGGAGGTGGTTTGCACAACTCTTCTGTAGTCCGGGGGATGGTTCTGAAAAATGACGCTGTTGGGAGCATCAAAAGGGTGGAGAAGGCAAAGgtgacaactaaatgttacacttaattggtggtgtgtcttttggcagtctgttgatacattatctattttcgattgatgatactgtcatgcttttatagtg...
species | Oryza sativa |
transcript | LOC_Os03g59020.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCTGAAAAATGACGCTGTTGGGAGCATCAAAAGGGTGGAGAAGGCAAAG ATTGCAGTATTTGEST: gi|29667202|gb|CB663477.1|CB663477
genomic: TTCTGAAAAATGACGCTGTTGGGAGCATCAAAAGGGTGGAGAAGGCAAAGgtgacaacta ... aatcaatcagATTGCAGTATTTG
EST: TTCTGAAAAATGACGCTGTTGGGAGCATCAAAAGGGTGGAGAAGGCAAAG ATTGCAGTATTTGCTGGCGGTGTTGATACTTCTGCAACTGAAACCAAGGGAEST: gi|29616021|gb|CB621033.1|CB621033
genomic: TTCTGAAAAATGACGCTGTTGGGAGCATCAAAAGGGTGGAGAAGGCAAAGgtgacaacta ... aatcaatcagATTGCAGTATTTGCTGGCGGTGTTGATACTTCTGCAACTGAAACCAAGGGA
EST: TTCTGAAAAATGACGCTGTTGGGAGCATCAAAAGGGTGGAGAAGGCAAAG ATTGCAGTATTTGCTGGCGGTGTTGATACTTCTGCAACTGANACCAAGGGA
genomic: TTCTGAAAAATGACGCTGTTGGGAGCATCAAAAGGGTGGAGAAGGCAAAGgtgacaacta ... aatcaatcagATTGCAGTATTTGCTGGCGGTGTTGATACTTCTGCAACTGAAACCAAGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACTACTTGGAGGTGGTTTGCACAACTCTTCTGTAGTCCGGGGGATGGTTCTGAAAAATGACGCTGTTGGGAGCATCAAAAGGGTGGAGAAGGCAAAGgtgacaactaaatgttacacttaattggtggtgtgtcttttggcagtctgttgatacattatctattttcgattgatgatactgtcatgcttttatagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG