1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGAGCTAGAGCGACTTACCCGTGTTTTCACCCAGAAAATCCACGACTTGATTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAGgttattttcctttgcatatcctctcatttgagactttggtgagaaataggcatatgcatatgtttattctgatgtggcttgttttttttcatggatgtag
species | Oryza sativa |
transcript | LOC_Os03g58040.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAG ACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCTEST: gi|58609006|gb|CK037039.1|CK037039
genomic: TTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAGgttattttcc ... atggatgtagACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCT
EST: TTGGCATTCATACAGATGTTCCAGCTCCCGATATGGGAACCAACTCTCAG ACAATGGCGTGGATACTTGACGAATACTCAAAEST: gi|66915471|gb|CX102319.1|CX102319
genomic: TTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAGgttattttcc ... atggatgtagACAATGGCGTGGATACTTGACGAATACTCAAA
EST: TTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAG ACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCTEST: gi|88428743|gb|CI599459.1|CI599459
genomic: TTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAGgttattttcc ... atggatgtagACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCT
EST: TTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAG ACAATGGCGTGGATACTTGACGAATACTCAAAGTTT-ATGGTTATTCAC-TEST: gi|29673988|gb|CB670263.1|CB670263
genomic: TTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAGgttattttcc ... atggatgtagACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCT
EST: TTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAG ACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCTEST: gi|29674431|gb|CB670706.1|CB670706
genomic: TTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAGgttattttcc ... atggatgtagACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCT
EST: TTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAG ACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCTEST: gi|163928511|gb|EG711396.1|EG711396
genomic: TTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAGgttattttcc ... atggatgtagACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCT
EST: TTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAG ACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCTEST: gi|88314120|gb|CI602452.1|CI602452
genomic: TTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAGgttattttcc ... atggatgtagACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCT
EST: CATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAG ACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCTEST: gi|33675066|gb|CF303305.1|CF303305
genomic: CATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAGgttattttcc ... atggatgtagACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCT
EST: TTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAG ACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCT
genomic: TTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAGgttattttcc ... atggatgtagACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGCTAGAGCGACTTACCCGTGTTTTCACCCAGAAAATCCACGACTTGATTGGCATTCATACAGATGTTCCAGCTCCAGATATGGGAACCAACTCTCAGgttattttcctttgcatatcctctcatttgagactttggtgagaaataggcatatgcatatgtttattctgatgtggcttgttttttttcatggatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC