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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttgaaccttcgcagagtgtcctaacaatcacatcgatagcttcacttggtttaatgctttcccctggttgtagctcacttgattacaatcatt...

Basic information

species Oryza sativa
transcript LOC_Os03g57790.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g57790.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G120674_T01 (Zea mays), 5'ss of exon 4
---------ATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttgaaccttcgcagagtgtcctaacaatcacatcga--tagcttcacttggtt-taatgctttcccctggttgta--gctc-acttgattacaatcatt-
         ||||||| ||||| ||||| ||||||||||| || ||||||||||||||||||||||| || |||||||||||||| ||||||||| |       || |        | | | ||||  | ||  || ||||  || ||| |||  ||  |      || ||  |||| | | |||||   |     
TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactcattttgtcac-------tcaacctatcatgttgaaataacttcgttttgttctaacactgcctgtctattatactgctctaatggattattgtatcca

upper sequence: LOC_Os03g57790.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G007260_T01 (Zea mays), 5'ss of exon 5
---------ATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttgaaccttcgcagagtgtcctaacaatcacatcga--tagcttcacttggtttaat-gctttcccctggttgta--gct-cacttgattacaatcatt
         ||||||| ||||| ||||| ||||||||||| || ||||| |||||||| |||||||| || |||||||||||||| |||||||   |   |  |            | | | ||||  | ||  || |  || || |||  ||  ||  |      |||||  |||  | | |||||   |  ||
TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctcatattt------gtcactcaacctatcatgttgaaataaccccattttgttcgatcactgcctgtctattgtattgctgtaatggattattgtattt

upper sequence: LOC_Os03g57790.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G007260_T02 (Zea mays), 5'ss of exon 4
---------ATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttgaaccttcgcagagtgtcctaacaatcacatcga--tagcttcacttggtttaat-gctttcccctggttgta--gct-cacttgattacaatcatt----------------------------------------------------------------------------------
         ||||||| ||||| ||||| ||||||||||| || ||||| |||||||| |||||||| || |||||||||||||| |||||||   |   |  |            | | | ||||  | ||  || |  || || |||  ||  ||  |      |||||  |||  | | |||||   |  ||                                                                                  
TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctcatattt------gtcactcaacctatcatgttgaaataaccccattttgttcgatcactgcctgtctattgtattgctgtaatggattattgtatttgtatccagtagaaagctgaaagctcatgcatttggtcccacctaactgaattggcattgttataatttcaattgccatatag

upper sequence: LOC_Os03g57790.2 (Oryza sativa), 5'ss of exon 4
lower sequence: EFJ23951 (Selaginella moellendorffii), 5'ss of exon 4
---------ATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttgaaccttcgcagagtgtcctaacaatcacatcgatagcttcacttggtttaatgctttcccctggttgtagctcacttgattacaatcatt
         ||||||| || ||  | || ||||| |||||||| |||||||| || ||||||||||| || ||| |||| || |||||||| |  || |||   | |    |||    |||| | ||  | |    |||  || |||   || | | ||                              
TTTATGCCGATGGAAGCATTTGTCTCGACATCCTCCAAAATCAGTGGAGCCCGATTTATGATGTTGCCGCAATACTGACATCGATCCAGgtttgcttggaagtgttgagctgtg----aacactgactccaagtttttctttttgttct-tgttcttccag----------------------------

upper sequence: LOC_Os03g57790.2 (Oryza sativa), 5'ss of exon 4
lower sequence: EFJ21576 (Selaginella moellendorffii), 5'ss of exon 4
---------ATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttgaaccttcgcagagtgtcctaacaatcacatcgatagcttcacttggtttaatgctttcccctggttgtagctcacttgattacaatcatt
         ||||||| || ||  | || ||||| |||||||| |||||||| || ||||||||||| || ||| |||| || |||||||| |   ||| |  |  |  |||  | | |||| | ||  | |    |||  || |||       |||  |  |                          
TTTATGCCGATGGAAGCATTTGTCTCGACATCCTCCAAAATCAGTGGAGCCCGATCTATGATGTTGCCGCAATACTGACATCGATCCAGgt-ttgcttgcaagt--gttgagc-tgcgaacactgactccaagtttttcttttcgttcttcttgttcttccag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11025772|gb|AU162373.1|AU162373
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|86532121|gb|CI172327.1|CI172327
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88220568|gb|CI220128.1|CI220128
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88384196|gb|CI548537.1|CI548537
EST:     TATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: TATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|58688873|gb|CK077560.1|CK077560
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|38469192|gb|CF953323.1|CF953323
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|15008914|gb|AU223302.1|AU223302
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88537072|gb|CI464883.1|CI464883
EST:     CAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: CAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|2313025|gb|C29180.1|C29180
EST:     ATCAATGGAGCCCTATATATNATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTNATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|4716198|gb|AU057314.1|AU057314
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|4716098|gb|AU057214.1|AU057214
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88455962|gb|CI526778.1|CI526778
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|38468844|gb|CF952975.1|CF952975
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88420443|gb|CI562077.1|CI562077
EST:     CTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: CTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|86603007|gb|CI357371.1|CI357371
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATAGTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88505768|gb|CI433274.1|CI433274
EST:     CCTCTATCCAG                         TCCGTGCTCTGTGATCCAAACCCAAACTCCCCTCCAAACTCCGAAGCAGCC
genomic: CCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|218505167|gb|FG956727.1|FG956727
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88284070|gb|CI405516.1|CI405516
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|86827016|gb|CI268870.1|CI268870
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88289243|gb|CI553219.1|CI553219
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88376677|gb|CI537981.1|CI537981
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|38469613|gb|CF953744.1|CF953744
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|58590675|gb|CF988983.1|CF988983
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|42592241|gb|CK738727.1|CK738727
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|7608686|gb|AU090468.1|AU090468
EST:     CCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAAACTCCNAAGCAGC
genomic: CCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGC-AAACTCCGAAGCAGC
EST: gi|117237213|gb|CT861798.1|CT861798
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88543885|gb|CI473932.1|CI473932
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|86489541|gb|CI132174.1|CI132174
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|218485740|gb|FG958740.1|FG958740
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|27576883|gb|CA999577.1|CA999577
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88323142|gb|CI550821.1|CI550821
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|13896438|gb|AU182774.1|AU182774
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|58667929|gb|CK056615.1|CK056615
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|86545526|gb|CI185732.1|CI185732
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCGATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88416265|gb|CI538421.1|CI538421
EST:     ATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|38468296|gb|CF952427.1|CF952427
EST:     ATCAATGGAGCCCTATATATAATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88297174|gb|CI545264.1|CI545264
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|38474625|gb|CF958758.1|CF958758
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|33655967|gb|CF278581.1|CF278581
EST:     TCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: TCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88970549|gb|CI384051.1|CI384051
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAT                         TCCCTGCTCTTTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|86419732|gb|CI054533.1|CI054533
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|2312219|gb|C28374.1|C28374
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGNTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88464435|gb|CI544896.1|CI544896
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88547887|gb|CI478215.1|CI478215
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|58675863|gb|CK064550.1|CK064550
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|38480664|gb|CF964753.1|CF964753
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|87030448|gb|CI252725.1|CI252725
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|58677295|gb|CK065982.1|CK065982
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88491073|gb|CI428345.1|CI428345
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|29666285|gb|CB662560.1|CB662560
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|88442335|gb|CI541542.1|CI541542
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|86861737|gb|CI329520.1|CI329520
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|33797775|gb|CF324747.1|CF324747
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
EST: gi|218500669|gb|FG957555.1|FG957555
EST:     ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAG                         TCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC
genomic: ATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttg ... ttatctgcagTCCCTGCTCTGTGATCCAAACCCAAACTCCCCTGCAAACTCCGAAGCAGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttgaaccttcgcagagtgtcctaacaatcacatcgatagcttcacttggtttaatgctttcccctggttgtagctcacttgattacaatcatt

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