1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TAACAGCTACTTCCCAGTTCCCCCATTTTTAGCTCCTACGCCAATTGGTGACTTCAACCAAGCTATGTCTGAAGCTGATCACAAGATCATAGATGGGGAGgtatgtacttaaacactttgaatataatagatacagaagttatagtctcctgaactcatgacttaattaggtactccctccgtttcacaatgtaagtcat...
species | Oryza sativa |
transcript | LOC_Os03g57690.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTTCAACCAAGCTATGTCTGAAGCTGATCACAAGATCATAGATGGGGAG GTGAAACTTGAATCCCAGTACTATTTCTACATGGAGACACAGACGGCCTTAEST: gi|29672952|gb|CB669227.1|CB669227
genomic: ACTTCAACCAAGCTATGTCTGAAGCTGATCACAAGATCATAGATGGGGAGgtatgtactt ... tttgttacagGTGAAACTTGAATCCCAGTACTATTTCTACATGGAGACACAGACGGCCTTA
EST: ACTTCAACCAAGCTATGTCTGAAGCTGATCACAAGATCATAGATGGGGAG GTGAAACTTGAATCCCAGTACTATTTCTACATGGAGACACAGACGGCCTTAEST: gi|29646620|gb|CB651627.1|CB651627
genomic: ACTTCAACCAAGCTATGTCTGAAGCTGATCACAAGATCATAGATGGGGAGgtatgtactt ... tttgttacagGTGAAACTTGAATCCCAGTACTATTTCTACATGGAGACACAGACGGCCTTA
EST: ACTTCAACCAAGCTATGTCTGAAGCTGATCACAAGATCATAGATGGGGAG GTGAAACTTGAATCCCAGTACTATTTCTACATGGAGACACAGACGGCCTTAEST: gi|25797201|gb|CA753162.1|CA753162
genomic: ACTTCAACCAAGCTATGTCTGAAGCTGATCACAAGATCATAGATGGGGAGgtatgtactt ... tttgttacagGTGAAACTTGAATCCCAGTACTATTTCTACATGGAGACACAGACGGCCTTA
EST: ACTTCAACCAAGCTATGTCTGAAGCTGATCACAAGATCATAGATGGGGAG GTGAAACTTGAATCCCAGTACTATTTCTACATGGAGACACAGACGGCCTTAEST: gi|58653080|gb|CK041760.1|CK041760
genomic: ACTTCAACCAAGCTATGTCTGAAGCTGATCACAAGATCATAGATGGGGAGgtatgtactt ... tttgttacagGTGAAACTTGAATCCCAGTACTATTTCTACATGGAGACACAGACGGCCTTA
EST: ACTTCAACCAAGCTATGTCTGAAGCTGATCACAAGATCATAGATGGGGAG GTGAAACTTGAATCCCAGTACTATTTCTACATGG
genomic: ACTTCAACCAAGCTATGTCTGAAGCTGATCACAAGATCATAGATGGGGAGgtatgtactt ... tttgttacagGTGAAACTTGAATCCCAGTACTATTTCTACATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACAGCTACTTCCCAGTTCCCCCATTTTTAGCTCCTACGCCAATTGGTGACTTCAACCAAGCTATGTCTGAAGCTGATCACAAGATCATAGATGGGGAGgtatgtacttaaacactttgaatataatagatacagaagttatagtctcctgaactcatgacttaattaggtactccctccgtttcacaatgtaagtcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctccg