Sequence
atgc intronic sequence ATGC exonic sequenceGAAGCATGCAGTGAATTTGTTACTCGTTATCATCAAAACCAGTTATCTAGTGGCAAAGAAGCTGGAAAAAATCTTCCCATGCTTTCATCTGCATGCCCAGgtaaaattgtttgcagggtactatgtaatttaggtatcatgaattctgtacttccacataatgcttgtactctggtaaaaaatatttgatgtttagaata...
Basic information
species | Oryza sativa |
transcript | LOC_Os03g53750.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os03g53750.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G171998_T01 (Zea mays), 5'ss of exon 4
GAAGCATGCAGTGAATTTGTTACTCGTTATCATCAAAACCAGTTATCTAGTGGCAAAGAAGCTGGAAAAAATCTTCCCATGCTTTCATCTGCATGCCCAGgtaaaattgtttgcagggtactatgta-atttaggtatcatgaattctgtacttccacataatgcttgtact-ctggtaaaaaatatttgatgtttagaata
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GAAGCATGCAATGAATTTGTTTCACGGTATCAGAGAAGTCAACCATCTAGTGGCCAAGAAGCTGGAGCCAATCTTCCACTGATTTCATCTGCATGTCCGGgtaaaat-atttgttgggaacttgacatatctatacatctatatctttatactatattaaagcaccagtttttctggttccacggtttccactgtcgtcgt-
upper sequence: LOC_Os03g53750.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G456690_T01 (Zea mays), 5'ss of exon 4
GAAGCATGCAGTGAATTTGTTACTCGTTATCATCAAAACCAGTTATCTAGTGGCAAAGAAGCTGGAAAAAATCTTCCCATGCTTTCATCTGCATGCCCAGgtaaaattgtttgcaggg---------------tact------atgtaatttaggtatcatgaattctgta--cttcca--cataatgcttgtactctggtaaaaaatatttgatgtttagaata------------------------------------------------------
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GAAGCATGCAATGAATTTGTTTCACGTTATCAGAAAAACCATTCATGTAGTGGCCAAGAAGCTGGAGCCAATCTTCCAATGATTTCATCTGCATGCCCGGgtaagatt-tttgctgggaacatgacatgtggatacttgcataacgcagtttgggttttaaaaattctgtaaccttgcatgcataatactaatggtttacaactaccttttatgcatttgctttagaaacaagtgcatgatttgttcacaaaatgtgtcacagcctcttccacttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|218489808|gb|FG954312.1|FG954312EST: CATCTGCATGCCCAG GTTGGATATGCTATGCAGAAAAGACTCTCGGTTCATTTATCTTGCCTTACA
genomic: CATCTGCATGCCCAGgtaaaattgt ... caacttgcagGTTGGATATGCTATGCAGAAAAGACTCTCGGTTCATTTATCTTGCCTTACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGCATGCAGTGAATTTGTTACTCGTTATCATCAAAACCAGTTATCTAGTGGCAAAGAAGCTGGAAAAAATCTTCCCATGCTTTCATCTGCATGCCCAGgtaaaattgtttgcagggtactatgtaatttaggtatcatgaattctgtacttccacataatgcttgtactctggtaaaaaatatttgatgtttagaata
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA