1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCTCCCTTTCCTTCTGTCTCACTGTGCAAAGAAATAGAAACTACAGCTTCTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAGgtttgttatttttttatttatttgtcacgcctttgtctttttgtttggagttagttgatgttgctattaaatgcag
species | Oryza sativa |
transcript | LOC_Os03g53250.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAG GTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTAAAAATTTTEST: gi|86904866|gb|CI310659.1|CI310659
genomic: CTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAGgtttgttatt ... ttaaatgcagGTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTAAAAATTTT
EST: CTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAG GTAAGATATCCAGACACTCGATGTGCTTCTAGTGATGAAGTTGAAAATTTTEST: gi|58659295|gb|CK047975.1|CK047975
genomic: CTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAGgtttgttatt ... ttaaatgcagGTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTAAAAATTTT
EST: CTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAG GTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTAAAAATTTTEST: gi|33797190|gb|CF324459.1|CF324459
genomic: CTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAGgtttgttatt ... ttaaatgcagGTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTAAAAATTTT
EST: CTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAG GTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTAAAAATTTTEST: gi|58687681|gb|CK076368.1|CK076368
genomic: CTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAGgtttgttatt ... ttaaatgcagGTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTAAAAATTTT
EST: CTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAG GTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTAAAAATTTTEST: gi|58670758|gb|CK059444.1|CK059444
genomic: CTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAGgtttgttatt ... ttaaatgcagGTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTAAAAATTTT
EST: CTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAG GTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTAAAAATTTTEST: gi|58653163|gb|CK041843.1|CK041843
genomic: CTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAGgtttgttatt ... ttaaatgcagGTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTAAAAATTTT
EST: CTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAG GTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTAAAAATTTT
genomic: CTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAGgtttgttatt ... ttaaatgcagGTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTAAAAATTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTCCCTTTCCTTCTGTCTCACTGTGCAAAGAAATAGAAACTACAGCTTCTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAGgtttgttatttttttatttatttgtcacgcctttgtctttttgtttggagttagttgatgttgctattaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG