Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTTTGTCGAGTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatcttcagctaaaatttgctttcgtgtcaagatttatatcttaattcacaccccttgtgtgtgtggtttttcttccag

Basic information

species Oryza sativa
transcript LOC_Os03g53150.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g53150.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G077356_T01 (Zea mays), 5'ss of exon 4
GATGTTTGTCGAGTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatcttcagctaaaatttgctttc---gtgtcaagatttatatcttaattcacaccccttgtgtgtgtggtttttcttccag---------------------
|||||||||||| |||||||| ||  |||||||||||||| |||| |||||||| ||||||||| ||| ||| ||| |||||||  ||| |   ||  ||   |     | ||||| |     |  |    |  |   ||||  | ||                      
GATGTTTGTCGACTCATGCAAGCGTCTGAGGATCATGAAGAGTTCTGAAGCCATAGGTCTTGgttagtgtctccagataaaattaccttccagagttccattgtaagatttttaatgcgtcaactctaaccgcctaagtttttcttcattgcaaaaaaaaaaaaatacag

upper sequence: LOC_Os03g53150.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G159285_T01 (Zea mays), 5'ss of exon 4
GATGTTTGTCGAGTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatcttcagctaaaatttgctttcgtgtc--------aagatttatatcttaattcacaccccttgtgtgtgtggtttttcttccag-------
||||||||||||||||||||  ||  |||||||||||||| | || |||||||| ||||||||| ||| ||| ||| |||||||  ||| | |           |||||||| || | || ||  ||| | | ||| |      |||     |        
GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGCCATAGGTCTTGgttagtgtctccagataaaattatcttccatagttccattataagatttacatgtcaactctaaccgcctatgttttcttcatttaaaaaaaaatacag

upper sequence: LOC_Os03g53150.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT4G14550.1 (Arabidopsis thaliana), 5'ss of exon 4
GATGTTTGTCGAGTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatcttcagctaaaatttgctttcgtgtcaagatttatatcttaattcacaccccttgtgtgtgtggtttttcttccag
|||||||||||||||||||||||| ||| | || ||||| || |||||||| ||||| |||||| ||| |  |   ||    || | ||   |    |  |   | | ||   |    ||  |  ||   ||| ||||| || |||
GATGTTTGTCGAGTCATGCAAACGTTTGCGCATAATGAAAGGATCCGAAGCAATTGGACTTGgtaagttttcttttctg---ttcgtttctat----aagtggctcttttctgtttttccaataatgctcgtg-tttttttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15008806|gb|AU223194.1|AU223194
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|15008394|gb|AU222782.1|AU222782
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|88257684|gb|CI360270.1|CI360270
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATT-GTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTCCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|10931327|gb|AU161601.1|AU161601
EST:     CATGCAAACGCTTGAGGATCCATGAAGGGTTCCGAAGCCATTGGTCNTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGT
genomic: CATGCAAACGCTTGAGGAT-CATGAAGGGTTCCGAAGCCATTGGTC-TTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGT
EST: gi|27547092|gb|CA765289.2|CA765289
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAGAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|87032502|gb|CI266142.1|CI266142
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|88984831|gb|CI011778.1|CI011778
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|86595238|gb|CI262476.1|CI262476
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|8860135|gb|AU097453.1|AU097453
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGNAACAAGAGCTGAAAATGTTGCAGT
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAG-AACAAGAGCTGAAAATGTTGCAGT
EST: gi|88241744|gb|CI241593.1|CI241593
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|15008560|gb|AU222948.1|AU222948
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|10931555|gb|AU161829.1|AU161829
EST:     CCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: CCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|87013733|gb|CI269232.1|CI269232
EST:     GTCATGCATACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|58686964|gb|CK075651.1|CK075651
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|87033715|gb|CI188339.1|CI188339
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|8856221|gb|AU093539.1|AU093539
EST:     TCATGCAAACGCTTGAGGATCCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: TCATGCAAACGCTTGAGGAT-CATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|87013621|gb|CI269120.1|CI269120
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|87018381|gb|CI265673.1|CI265673
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|15008626|gb|AU223014.1|AU223014
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|88536598|gb|CI465331.1|CI465331
EST:     TTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAACCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAGAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|88409478|gb|CI561964.1|CI561964
EST:     TTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: TTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|15008730|gb|AU223118.1|AU223118
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CNCCAAGAGCAAAGGACAAGTNCAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|86887893|gb|CI298004.1|CI298004
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|88381363|gb|CI528343.1|CI528343
EST:     GGATCATGAAGGGTTCCGAAGCCATTGTTCTTG                         CACCAAGACCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|14575028|gb|AU197507.1|AU197507
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|8856770|gb|AU094088.1|AU094088
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|58679632|gb|CK068319.1|CK068319
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACCAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|15008562|gb|AU222950.1|AU222950
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CNCCAAGAGCAAAGGNCAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|88203351|gb|CI203200.1|CI203200
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|13806054|gb|AU181326.1|AU181326
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|18387131|gb|BM420329.1|BM420329
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAA-GGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|88456767|gb|CI544704.1|CI544704
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|86861901|gb|CI329599.1|CI329599
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATCTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|86602330|gb|CI262799.1|CI262799
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|14192097|gb|AU184308.1|AU184308
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|87018941|gb|CI256826.1|CI256826
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACCAAGAGCTGAAAATGTTGCAGT
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAAC-AAGAGCTGAAAATGTTGCAGT
EST: gi|88242474|gb|CI242323.1|CI242323
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|86509809|gb|CI152442.1|CI152442
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|15008774|gb|AU223162.1|AU223162
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|89165716|gb|CI102806.1|CI102806
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|10794852|gb|AU108818.1|AU108818
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|87034577|gb|CI189201.1|CI189201
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
EST: gi|58596036|gb|CK006564.1|CK006564
EST:     GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTG                         CACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA
genomic: GTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatct ... tttcttccagCACCAAGAGCAAAGGACAAGTACAAGAACAAGAGCTGAAAATGTTGCAGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGTTTGTCGAGTCATGCAAACGCTTGAGGATCATGAAGGGTTCCGAAGCCATTGGTCTTGgtcagtatcttcagctaaaatttgctttcgtgtcaagatttatatcttaattcacaccccttgtgtgtgtggtttttcttccag

- - - - - - - - - - - - -  GAGGAT