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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtcctccttatctgttttgttttaatgccatttaacttattgaattctctatcattcttttataggtatgagttttcattggacaaaacgtgt...

Basic information

species Oryza sativa
transcript LOC_Os03g52840.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 7
ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtcctccttat-ctgttttgttttaatgc-catttaacttattgaattctctatcattcttttataggtatgagttttcattggacaaaacgtgt
||||| ||||||||||| || |||  ||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| || | ||||||   | ||  ||| |    |  |  ||| | | |   ||    |   |  || |||| |   | | ||     |       ||  ||  
ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgt-cattttcctccccgttctagtttatagatacacatattaagcatggcgagcaataatttgttgttttttgcattttagccaaaaaaaagagaagggtt-

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 7
ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtcctccttatctgttttgttttaatgccatttaacttattgaattctctatcattcttttat---aggtatgagttttcattggacaaaacgtgt---------
|||||||| || ||||| || ||||| |||||||| |||||||||||||| ||  ||||| ||||||| || || |  || || ||||| |||||    |     |    | | |||| |  |  |  |  |    |||   |  | ||  | ||  ||| ||   |  |    |||||  | |    |||    |         
ACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAGgtattgt---tgcagggtatattttatcatggtagcgatgcttttagctacatttcattgatattttcatgtcatctcatggtttttgtggtgtgaaaatcttgaaatacag

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA14G36280.1 (Glycine max), 5'ss of exon 7
ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtcctccttatctgttttgtttta-atgccatttaacttattgaattctctatcattcttttataggtatga--gttttcattggacaaaacgtgt----
||||| || |||||||| || || || || ||||||||||| |||||||| ||||||||| |||| |||||||| |  || |||||||| |||||     |    | || | |  | |||| |  ||    |||  |||||  ||      |  ||  ||| |   ||  ||  ||||  |||  |      ||      
ACTGACACCAAGAAGATATCGGCTGTATCTATATTCTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGgtaggtaggtaccattgtattctgtgttgtggatattcttt--cttatcaaag-----agaatcttttaagcagtcggactgtttctatttcagttgctgttcactg

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 7
lower sequence: AT4G37930.1 (Arabidopsis thaliana), 5'ss of exon 7
ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtcctccttatctgttttgttttaatgccatttaacttattgaattctctatcattcttttataggtatgagttttcattggacaaaacgtgt
||||| || |||||||| ||||| || || || |||||||| ||||||||||| |||||||| || ||||||||||  || || || |||||||| |      || ||  |  |     |  || |  | | ||||| |     |||   |  || |    ||| || |    |||   |   ||        
ACTGACACCAAGAAGATATCAGCTGTGTCTATCTTCTTTGAAACAATGCCCTATAGATTGGACGAGAGCACTGGCTACATCGACTACGATCAGgttcttaactcttctattaagc--aatcatagtaacttataactaacccgcttcataacaatac----ataagtctttaattttgatttgcag-------

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 7
lower sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 7
ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtcctccttatctgttttgttttaatgccatttaacttattgaattc-tctatcattcttttataggtatgagttttcattggacaaaacgtgt----------------------------------------------------------------------------
||||| || ||||| || || || || || || || |||||||||||||| |||||||||||||| | |||||| |  ||||||||||| |||||    |    | | || |    ||   |||||||  || ||| |  |   ||  || |  || |  ||  || |||| ||||       ||||    |                                                                              
ACTGACACGAAGAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTATGACCAGgttggttag--ttcatagccagcttagcttaatgc--ttcaacattctatctttatccaatataccattg-agatatgggtttaatacatacaagcttttcgtttacggttcttatgttaagtaattgaacagtttttaaaccaaagtttatttatttgtgatacaataatttgcag

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv00s0211g00100.t01 (Vitis vinifera), 5'ss of exon 7
ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtcctccttatctgtt-------ttgttttaatgccatttaacttattgaattctctatcattcttttataggtatgagttttcattggacaaaacgtgt--
||||| || ||||| || || ||||| || ||||| |||||||||||||| || |||||| |||| ||||||||||  ||||| ||||| |||||  | | |||   ||   | |        || ||||| | ||||    || |   |||| |   | | | |||      ||| |  |||  |   ||||   || |  
ACTGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgta-actttccattttgcttatagcaggagttcttttagttccatcc--ctgagcaaatttttacttagttttt----actataatattt--tcacacaacttgtttaa

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 7
ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtcctccttatctgttttgttttaatgccatttaacttattgaattctctatcattcttttataggtatgagttttcattggacaaaacgtgt--
|| || || |||||||| || || || || ||||| |||||||||||||| ||||||||||||||||  ||||| |  ||||| ||||| |||||||| |  | ||  | |||  | | | |   |  |  |     |||  |  | |  |   |  |   || | |   | | |   |  |  |  |  | |  
ACCGACACCAAGAAGATATCTGCTGTGTCTATATTTTTTGAGACAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAGgtgcatttacatctctctct-ctctctctctctctctctctctctatctatctatggaagttcttccaattgatgcaaatatg-gtatgctaccatttttag

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 7
ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtcctccttatctgtt-------ttgttttaatgccatttaacttattgaattctctatcattcttttataggtatgagttttcattggacaaaacgtgt--
|| || || ||||| || || ||||| || ||||| |||||||||||||| || |||||| |||| ||||||||||  ||||| ||||| |||||  | | |||   ||   | |        || ||||| | ||||    || |   |||| |   | | | |||      ||| |  |||  |   ||||   || |  
ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgta-actttccattttgcttatagcaggagttcttttagttccatcc--ctgagcaaatttttacttagttttt----actataatattt--tcacacaacttgtttaa

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 7
lower sequence: PP1S21_270V6.1 (Physcomitrella patens), 5'ss of exon 7
ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgt---------gcaatgtcctccttatctgttttg--ttttaatgccatttaacttattgaattctctatcattcttttataggtatgagttttcattggacaaaacgtgt
|||||||| |||||||||||||| ||||| || ||||| ||||| |||||||||||| || | ||   ||| || |  || || |||||||||||         ||| ||    | |     ||||||  | | |  |   ||| || ||  || |    |    | | ||     | |  |        |||           
ACTGATACAAAGAAGATTTCAGCCGTTTCCATTTTCTTCGAGACTATGCCCTACAGACTGAACGAGTCCACAGGTTATATCGACTATGATCAGgtaaatattgtgcattgctaccgtagaaagttttgaatgtaagcgttgtttcacctaccgagtgaattcggttgccttggctagcaatatcagcagctgg-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25798315|gb|CA754276.1|CA754276
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|27576793|gb|CA999487.1|CA999487
EST:     TGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATTGTTGCGGGTGCA
genomic: TGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|58689542|gb|CK078229.1|CK078229
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|38472528|gb|CF956660.1|CF956660
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGGCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|58661735|gb|CK050415.1|CK050415
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|58589569|gb|CF987877.1|CF987877
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAACAGTTGATCGTTGCGGGTGC
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAA-AGTTGATCGTTGCGGGTGC
EST: gi|58691585|gb|CK080272.1|CK080272
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|29681406|gb|CB677681.1|CB677681
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|14571290|gb|BI118658.1|BI118658
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|29629705|gb|CB634714.1|CB634714
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAACCGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|38472219|gb|CF956350.1|CF956350
EST:     CAATGCCCTACAGATAGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|29674038|gb|CB670313.1|CB670313
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|33800499|gb|CF326119.1|CF326119
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|29681405|gb|CB677680.1|CB677680
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|38471655|gb|CF955786.1|CF955786
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|29672938|gb|CB669213.1|CB669213
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|84117692|gb|CD285458.1|CD285458
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|33381615|gb|CF196958.1|CF196958
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|4714773|gb|AU055890.1|AU055890
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|88413328|gb|CI581343.1|CI581343
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|29674139|gb|CB670414.1|CB670414
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|58692794|gb|CK081481.1|CK081481
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|58609394|gb|CK037427.1|CK037427
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
EST: gi|11442623|gb|BF430526.1|BF430526
EST:     CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG                         ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA
genomic: CAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 374

ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtc ... ttctgcacagATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG




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