1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCATCTGCGTCGCGGCGATCCTCGGGTCGACGCTGAACGGGGAGTTCGAGGACGTGAAGCTGCTCAACGATCTGCTCACCAAGAAGAACGCTGAAACAGGgtaacgaatcaaacagttcatttcttccaatcctctgcacaaagccacaaagtacttatatgccccaatgcacattgaaaactgaaaagtgtttgctgcatagtaaaaagctaatgcagagttgctgctggattgatttgaatgtgcag
species | Oryza sativa |
transcript | LOC_Os03g51080.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GACGTGAAGCTGCTCAACGATCTGCTCACCAAGAAGAACGCTGAAACAGG CTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCCEST: gi|29659446|gb|CB655721.1|CB655721
genomic: GACGTGAAGCTGCTCAACGATCTGCTCACCAAGAAGAACGCTGAAACAGGgtaacgaatc ... gaatgtgcagCTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCC
EST: GACGTGAAGCTGCTCAACGATCTGCTCACCAAGAAGAACGCTGAAACAGG CTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCCEST: gi|117217697|gb|CT845092.1|CT845092
genomic: GACGTGAAGCTGCTCAACGATCTGCTCACCAAGAAGAACGCTGAAACAGGgtaacgaatc ... gaatgtgcagCTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCC
EST: GACGTGAAGCTGCTCAACGATCTGCTCACCAAGAAGAACGCTGAAACAGG CTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGT-CATCGCGCCEST: gi|58666116|gb|CK054802.1|CK054802
genomic: GACGTGAAGCTGCTCAACGATCTGCTCACCAAGAAGAACGCTGAAACAGGgtaacgaatc ... gaatgtgcagCTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCC
EST: GACGTGAAGCTGCTCAACGATCTGCTCACCAAGAAGAACGCTGAAACAGG CTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCCEST: gi|58696140|gb|CK084827.1|CK084827
genomic: GACGTGAAGCTGCTCAACGATCTGCTCACCAAGAAGAACGCTGAAACAGGgtaacgaatc ... gaatgtgcagCTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCC
EST: GACGTGAAGCTGCTCAACGATCTGCTCACCAAGAAGAACGCTGAAACAGG CTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCCEST: gi|33799654|gb|CF325690.1|CF325690
genomic: GACGTGAAGCTGCTCAACGATCTGCTCACCAAGAAGAACGCTGAAACAGGgtaacgaatc ... gaatgtgcagCTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCC
EST: GACGTGAAGCTGCTCAACGATCTGCTCACCAAGAAGAACGCTGAAACAGG CTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCC
genomic: GACGTGAAGCTGCTCAACGATCTGCTCACCAAGAAGAACGCTGAAACAGGgtaacgaatc ... gaatgtgcagCTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATCTGCGTCGCGGCGATCCTCGGGTCGACGCTGAACGGGGAGTTCGAGGACGTGAAGCTGCTCAACGATCTGCTCACCAAGAAGAACGCTGAAACAGGgtaacgaatcaaacagttcatttcttccaatcctctgcacaaagccacaaagtacttatatgccccaatgcacattgaaaactgaaaagtgtttgctgcatagtaaaaagctaatgcagagttgctgctggattgatttgaatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC