1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGTTCATAAATTCCAAGTTTGGAACTCCAATGGAATACTCAGCATATGTTGGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAGgtatgctgtatgcattttttgcttagaccaaaaacatgtcccctgacctgaattttgaattaagaatgtgcatgtcatgctgcttaggtctgtttgcttt...
species | Oryza sativa |
transcript | LOC_Os03g50850.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAG GCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCTEST: gi|4714942|gb|AU056059.1|AU056059
genomic: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAGgtatgctgta ... aatatgacagGCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCT
EST: ACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAG GCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCTEST: gi|2427752|gb|C72215.1|C72215
genomic: ACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAGgtatgctgta ... aatatgacagGCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCT
EST: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAG GCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCTEST: gi|117216922|gb|CT845265.1|CT845265
genomic: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAGgtatgctgta ... aatatgacagGCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCT
EST: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAG GCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGEST: gi|66913816|gb|CX100664.1|CX100664
genomic: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAGgtatgctgta ... aatatgacagGCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTG
EST: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAG GCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCTEST: gi|29625134|gb|CB630145.1|CB630145
genomic: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAGgtatgctgta ... aatatgacagGCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCT
EST: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAG GCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCTEST: gi|29675682|gb|CB671957.1|CB671957
genomic: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAGgtatgctgta ... aatatgacagGCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCT
EST: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAG GCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCTEST: gi|58669047|gb|CK057733.1|CK057733
genomic: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAGgtatgctgta ... aatatgacagGCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCT
EST: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAG GCAATACAGAGAATACCTGGAGCATA
genomic: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAGgtatgctgta ... aatatgacagGCAATACAGAGAATACCTGGAGCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTCATAAATTCCAAGTTTGGAACTCCAATGGAATACTCAGCATATGTTGGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAGgtatgctgtatgcattttttgcttagaccaaaaacatgtcccctgacctgaattttgaattaagaatgtgcatgtcatgctgcttaggtctgtttgcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG