1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAGgtaactttctttattcatgcttgtgtgttttaaatgtagttgtaggttacgtagagcttgactactattcttatcatacatggccttaatagaccaacga...
species | Oryza sativa |
transcript | LOC_Os03g50620.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGATGACTATCTTGTGTTTGATTGCACAG GCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAACEST: gi|58611474|gb|CK039186.1|CK039186
genomic: ATGATGACTATCTTGTGTTTGATTGCCCAGgtaactttct ... gtttctccagGCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAAC
EST: GCAACTGGAGGGTTATTTGGATGATGACTATCTTGTGTTTGATTGTCCAG GCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAACEST: gi|426369|gb|D22232.1|D22232
genomic: GCAACTGGAGGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAGgtaactttct ... gtttctccagGCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAAC
EST: GCAACTGGAGGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAG GCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAAC
genomic: GCAACTGGAGGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAGgtaactttct ... gtttctccagGCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAGgtaactttctttattcatgcttgtgtgttttaaatgtagttgtaggttacgtagagcttgactactattcttatcatacatggccttaatagaccaacga
- - - - - - - - - - - - - - - - - - - - TGGAGG