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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttgatctcatacttgaatcccctgcaaaagaaaaagatctcatacttgaaactttcaaacttccatggaaactgagtgctgtataactaaatatttccttcaaaccaagcag

Basic information

species Oryza sativa
transcript LOC_Os03g49600.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g49600.3 (Oryza sativa), 5'ss of exon 4
lower sequence: AC217401.3_FGT001 (Zea mays), 5'ss of exon 4
ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttgatctcatacttgaatcccctgcaaaagaaaaagatctcatacttgaaactttcaaacttccatggaaactgagtgctgtataactaaatatttcctt-caaaccaagcag
|||| |||||| |||| || | |||||| || || |||||||||||||| ||||||||||| || | ||||||||     ||| ||||                |   | |  |  |   | |  |||  |||      |   |  || | |   ||||  ||  || ||| | || ||  ||||  | |||
ATGGCGAGGGAAGAGTCAATCCAGAAGGTGTTGCCTATTACAACAATCTGATAAACTACCTGCTTCGGAAAGgta-----tgagctca----------------agtgggagcaatttcgacatctgaggcttc--ggttggaaccgacatt---tgct-catgtctgaatgtctctttgtaaactgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58675601|gb|CK064288.1|CK064288
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58655963|gb|CK044643.1|CK044643
EST:     AGAAGGCGTANCATATTACAACAATCTTATAAACTAACTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58674624|gb|CK063311.1|CK063311
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58597861|gb|CK008389.1|CK008389
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58682006|gb|CK070693.1|CK070693
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|33797376|gb|CF324550.1|CF324550
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58676021|gb|CK064708.1|CK064708
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|29657770|gb|CB654045.1|CB654045
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|32948487|gb|BP185059.1|BP185059
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|218501129|gb|FG969556.1|FG969556
EST:     ACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: ACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|33794165|gb|CF322973.1|CF322973
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|29638848|gb|CB643857.1|CB643857
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|33381892|gb|CF197235.1|CF197235
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|88212028|gb|CI211668.1|CI211668
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|15852844|gb|BI805640.1|BI805640
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58669127|gb|CK057813.1|CK057813
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58684594|gb|CK073281.1|CK073281
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTC
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTC
EST: gi|40490189|gb|BX899802.1|BX899802
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|33674893|gb|CF303132.1|CF303132
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58683697|gb|CK072384.1|CK072384
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58669383|gb|CK058069.1|CK058069
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58679788|gb|CK068475.1|CK068475
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58658330|gb|CK047010.1|CK047010
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58680065|gb|CK068752.1|CK068752
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTAC
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTAC
EST: gi|58601658|gb|CK012186.1|CK012186
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTAACTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTT
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTT
EST: gi|58656764|gb|CK045444.1|CK045444
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58658921|gb|CK047601.1|CK047601
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|218498123|gb|FG968220.1|FG968220
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|29667348|gb|CB663623.1|CB663623
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58677515|gb|CK066202.1|CK066202
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCC
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCC
EST: gi|58603614|gb|CK014142.1|CK014142
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCT
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCT
EST: gi|29636221|gb|CB641230.1|CB641230
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58685477|gb|CK074164.1|CK074164
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58659974|gb|CK048654.1|CK048654
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|29643770|gb|CB648777.1|CB648777
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|29672036|gb|CB668311.1|CB668311
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|29671916|gb|CB668191.1|CB668191
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|29678657|gb|CB674932.1|CB674932
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|428803|gb|D24959.1|D24959
EST:     AGAAGGCGTAG-ATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58677937|gb|CK066624.1|CK066624
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|29638180|gb|CB643189.1|CB643189
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|29629596|gb|CB634605.1|CB634605
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|13423190|gb|AU176521.1|AU176521
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58680012|gb|CK068699.1|CK068699
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCCCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58670653|gb|CK059339.1|CK059339
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCT
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCT
EST: gi|5004341|gb|AU069490.1|AU069490
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58686123|gb|CK074810.1|CK074810
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58679549|gb|CK068236.1|CK068236
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58685224|gb|CK073911.1|CK073911
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58680064|gb|CK068751.1|CK068751
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58663549|gb|CK052235.1|CK052235
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58681752|gb|CK070439.1|CK070439
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|33795224|gb|CF323484.1|CF323484
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|14189009|gb|AU183652.1|AU183652
EST:     AGAAGGCGTA-CATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58682160|gb|CK070847.1|CK070847
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58601425|gb|CK011953.1|CK011953
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGA
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGA
EST: gi|58681508|gb|CK070195.1|CK070195
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58683209|gb|CK071896.1|CK071896
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58592952|gb|CF991260.1|CF991260
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|29667382|gb|CB663657.1|CB663657
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|700314|gb|D46605.1|D46605
EST:     GAAGGCGTAG-ATNATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: GAAGGCGTAGCAT-ATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|33795297|gb|CF323520.1|CF323520
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58677218|gb|CK065905.1|CK065905
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|29635607|gb|CB640616.1|CB640616
EST:     AGAAAGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCA
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCA
EST: gi|58655540|gb|CK044220.1|CK044220
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|14189008|gb|AU183651.1|AU183651
EST:     AGAAGGCGTA-NATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|8860126|gb|AU097444.1|AU097444
EST:     AGAAGGCGTA-CATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58589976|gb|CF988284.1|CF988284
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58660539|gb|CK049219.1|CK049219
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|33793788|gb|CF322778.1|CF322778
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|14189007|gb|AU183650.1|AU183650
EST:     AGAAGGCGTA-CATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|58655284|gb|CK043964.1|CK043964
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
EST: gi|33675008|gb|CF303247.1|CF303247
EST:     AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAG                         GTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG
genomic: AGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttg ... aaccaagcagGTATCACTCCTTATGTCAATCTTTACCACTACGATCTCCCTCTTGCGCTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGTGAGGGACGAGTTAACCAAGAAGGCGTAGCATATTACAACAATCTTATAAACTACCTTCTGCAGAAAGgtaccgcttgatctcatacttgaatcccctgcaaaagaaaaagatctcatacttgaaactttcaaacttccatggaaactgagtgctgtataactaaatatttccttcaaaccaagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG