1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGgtaaaatgattgtatgctcctattgatgcataaataattgttgttttcgttcttgatgcttttgcccactccattaattctcttgggtgtacagcatttt...
species | Oryza sativa |
transcript | LOC_Os03g47770.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAG ATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTAEST: gi|88205530|gb|CI205379.1|CI205379
genomic: TCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGgtaaaatgat ... ttgtctgcagATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTA
EST: ATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAG ATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTAEST: gi|8859712|gb|AU097030.1|AU097030
genomic: ATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGgtaaaatgat ... ttgtctgcagATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTA
EST: TCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAG ATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTAEST: gi|89177790|gb|CI390969.1|CI390969
genomic: TCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGgtaaaatgat ... ttgtctgcagATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTA
EST: CATTTACAGCAATGGGCATATCTGTTAAG ATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTAEST: gi|33813694|gb|CF332734.1|CF332734
genomic: CATTTACAGCAATGGGCATATCTGTTTAGgtaaaatgat ... ttgtctgcagATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTA
EST: TCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAG ATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTAEST: gi|87034301|gb|CI188925.1|CI188925
genomic: TCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGgtaaaatgat ... ttgtctgcagATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTA
EST: TCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAG ATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTAEST: gi|86432724|gb|CI086335.1|CI086335
genomic: TCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGgtaaaatgat ... ttgtctgcagATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTA
EST: TCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTNAG ATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTAEST: gi|88206195|gb|CI206044.1|CI206044
genomic: TCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGgtaaaatgat ... ttgtctgcagATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTA
EST: TCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAG ATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTAEST: gi|88429510|gb|CI551575.1|CI551575
genomic: TCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGgtaaaatgat ... ttgtctgcagATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTA
EST: TTACAGCAATGGGCATATCTGTTTAG ATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTAEST: gi|11565148|gb|AU165784.1|AU165784
genomic: TTACAGCAATGGGCATATCTGTTTAGgtaaaatgat ... ttgtctgcagATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTA
EST: TCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAG ATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTA
genomic: TCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGgtaaaatgat ... ttgtctgcagATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGgtaaaatgattgtatgctcctattgatgcataaataattgttgttttcgttcttgatgcttttgcccactccattaattctcttgggtgtacagcatttt
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