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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTTTGTTACAGCAAAATGCTTGGAGGCCACAGAGGGGACTGCCCGAAAACTCAGTTTCAATTCTTCGTGCTTGGCTTTTTGAACACTTCCTTCACCCgtaagtgactttctttatacactcattttcatttgcctgttttttcttttgttgtcatgacattttgttgctttcttag

Basic information

species Oryza sativa
transcript LOC_Os03g47740.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g47740.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G148098_T01 (Zea mays), 5'ss of exon 3
ATGGTTTGTTACAGCAAAATGCTTGGAGGCCACAGAGGGGACTGCCCGAAAACTCAGTTTCAATTCTTCGTGCTTGGCTTTTTGAACACTTCCTTCACCCgtaagtgactttc-ttta---tacactcattttcatttgcctg--ttttttcttttgttgtcatgacattttgttgctttcttag
||||| || ||||||||||||||||||||||||||||||| || || ||||| ||||| || ||||| || |||||||||||||||||||||||||||||||||||   ||   ||||   || |   || |||  |  ||    ||||||| |||||| ||||||||   ||   ||||  |||
ATGGTATGCTACAGCAAAATGCTTGGAGGCCACAGAGGGGGCTACCTGAAAATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACACTTCCTTCACCCgtaagttttttctgtttaacttagagatatgttcgctcaccccccttttttcatttgttctcatgacacactgacacttt--tag

upper sequence: LOC_Os03g47740.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G011588_T03 (Zea mays), 5'ss of exon 4
ATGGTTTGTTACAGCAAAATGCTTGGAGGCCACAGAGGGGACTGCCCGAAAACTCAGTTTCAATTCTTCGTGCTTGGCTTTTTGAACACTTCCTTCACCCgtaagtgactttcttta---tacactcattttcatttgcctgttttttctt--ttgttgtcatgacattttgttgctttcttag
||||| || |||||||||| ||||||||||||||||| ||||| || ||||| ||||| || ||||| || ||||||||||||||||| |||||||||||||||||   |    |||   || |   || |||| |  ||     ||| ||  ||||| ||||| |||  ||   |  ||||||
ATGGTATGCTACAGCAAAACGCTTGGAGGCCACAGAGAGGACTACCTGAAAATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCCgtaagtttttccgcttaacttagagatatgttcactcacccccccttttttatttgttctcatgccatgctg--acaatcttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86829670|gb|CI286826.1|CI286826
EST:     AACTCAGTTTCAATTCTTCGTGCTTGGCTTTTTGAACACTTCCTTCACCC                         GTATCCAAAAGATTCAGAAAAGCTGATGCTAGCGAGACAAACTGGCTTAAC
genomic: AACTCAGTTTCAATTCTTCGTGCTTGGCTTTTTGAACACTTCCTTCACCCgtaagtgact ... gctttcttagGTATCCAAAAGATTCAGAAAAGCTGATGCTAGCGAGACAAACTGGCTTAAC
EST: gi|55828195|gb|AU067843.2|AU067843
EST:     AACTCAGTTTCAATTCTTCGTGCTTGGCTTTTTGAACACTTCCTTCACCC                         GTATCCAAAAGATTCAGAAAAGCTGATGCTAGCGAGACAAACTGGCTTAAC
genomic: AACTCAGTTTCAATTCTTCGTGCTTGGCTTTTTGAACACTTCCTTCACCCgtaagtgact ... gctttcttagGTATCCAAAAGATTCAGAAAAGCTGATGCTAGCGAGACAAACTGGCTTAAC
EST: gi|66915479|gb|CX102327.1|CX102327
EST:     AACTCAGTTTCAATTCTTCGTGCTTGGCTTTTTGAACACTTCCTTCACCC                         GTATCCAAAAGATTCAGAAAAGCTGATGCTAGCGAGACAAACTGGCTTAAC
genomic: AACTCAGTTTCAATTCTTCGTGCTTGGCTTTTTGAACACTTCCTTCACCCgtaagtgact ... gctttcttagGTATCCAAAAGATTCAGAAAAGCTGATGCTAGCGAGACAAACTGGCTTAAC