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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAGCAAAATTTTTAAAGGTTCAGTAAATAGAGTATCAAGAGGGCACTACAATGGAAACACCCATGAAGGCCACTCAGCATGGCACACTAAAGCCTATgtacggcccaattctgcctgtcttttcatcttcccacactagccatcttaagtcatacatactgtgagacacagaagaaaatttcgctcctgccaattgc...

Basic information

species Oryza sativa
transcript LOC_Os03g42820.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g42820.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G342105_T01 (Zea mays), 5'ss of exon 3
GCTGAGCAAAATTTTTAAAGGTTCAGTAAATAGAGTATCAAGAGGGCACTACAATGGAAACACCCATGAAGGCCACTCAGCATGGCACACTAAAGCCTATgtacggcccaatt-ctgcctgtctt-------ttcatcttccc------acactagccatcttaagtcatacatactgtgagacacagaagaaaatttcgctcctgccaattgc
| |||| ||||| ||||||||| ||||||||||||| |||||||| |||||||| || ||| ||||||||||| | |||||   |||||||||| | ||||||| || || || | || | || |       || |||||  |      | | |||  |  ||||||   || || | | | | |   |  |||   ||               
GTTGAGTAAAATATTTAAAGGTCCAGTAAATAGAGTTTCAAGAGGACACTACAACGGGAACTCCCATGAAGGCTATTCAGCTCAGCACACTAAATCATATgtactgctcagttgcagcttatcctcttaatctttatctttactggtgcaaattagttaatttaagtagaacctaatataaaaaatgaagaaaagaatca--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88425789|gb|CI571689.1|CI571689
EST:     ACAATGGAAACACCCATGAAGGCCACTCAGCATGGCACACTAAAGCCTAT                         GAGCATGACAGTGACCATGAAGACATAGATCGTGCTATTGCATTATCTTTA
genomic: ACAATGGAAACACCCATGAAGGCCACTCAGCATGGCACACTAAAGCCTATgtacggccca ... atcactatagGAGCATGACAGTGACCATGAAGACATAGATCGTGCTATTGCATTATCTTTA