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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGCCATCTTACTTCTTACAGAAATCACACCCAAAAGTGTTGCAGTTCATAATGCTACAGAGGTTGCTAGGTTTGTTGTAAGgtgagacagatgtaagcaggacttagtttcaaatatttgttgaaatagcctgcttgttaatacgatgtttaatgctgtatatctattgtaatgtatcag

Basic information

species Oryza sativa
transcript LOC_Os03g39640.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g39640.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 4
GTCGCCATCTTACTTCTTACAGAAATCACACCCAAAAGTGTTGCAGTTCATAATGCTACAGAGGTTGCTAGGTTTGTTGTAAGgtgagacagatgtaagcaggacttagtttcaaatatttgttgaaata--gcctgcttgttaatacg-at--gtttaatgctgtatatctattgtaatgtatcag------------------------------------------------------------------
|| || || || ||||| || ||||| || || |||||  | || || |||||||| |||||||||||||||||||| ||||| | ||| ||   |  |    | | |    ||  |     |||||||   |      |||||| |   ||  ||||     |  | || | || || |    | |                                                                  
GTTGCAATTTTGCTTCTCACTGAAATTACTCCAAAAAGCCTAGCTGTCCATAATGCCACAGAGGTTGCTAGGTTTGTGgtaagtttagatagtgctttgtgaaattgaaccacagttcacaattgaaatgctgatcagatgttaaaaaatattggttttcaagttcacattttttctagttgcacggttttcatgtagtgagttggcatcactgcttccaaatttatttgactaatgatttccatgcttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29634884|gb|CB639893.1|CB639893
EST:     AAAAGTGTTGCAGTTCATAATGCTACAGAGGTTGCTAGGTTTGTTGTAAG                         ACCAGTTGCATGGCTTTCATTGGTCCTGTATCCAGTTGGGCGAATTGTCAC
genomic: AAAAGTGTTGCAGTTCATAATGCTACAGAGGTTGCTAGGTTTGTTGTAAGgtgagacaga ... aatgtatcagACCAGTTGCATGGCTTTCATTGGTCCTGTATCCAGTTGGGCGAATTGTCAC
EST: gi|29634823|gb|CB639832.1|CB639832
EST:     AAAAGTGTTGCAGTTCATAATGCTACAGAGGTTGCTAGGTTTGTTGTAAG                         ACCAGTTGCATGGCTTTCATTGGTCCTGTAT
genomic: AAAAGTGTTGCAGTTCATAATGCTACAGAGGTTGCTAGGTTTGTTGTAAGgtgagacaga ... aatgtatcagACCAGTTGCATGGCTTTCATTGGTCCTGTAT
EST: gi|29634802|gb|CB639811.1|CB639811
EST:     AAAAGTGTTGCAGTTCATAATGCTACAGAGGTTGCTAGGTTTGTTGTAAG                         ACCAGTTGCATGGCTTTCATTGGTCCTGTATCCAGTTGGGCGAATTGTCAC
genomic: AAAAGTGTTGCAGTTCATAATGCTACAGAGGTTGCTAGGTTTGTTGTAAGgtgagacaga ... aatgtatcagACCAGTTGCATGGCTTTCATTGGTCCTGTATCCAGTTGGGCGAATTGTCAC