1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCTgtgagtaacacaatatttccaccttaaatgtacttttatgaagttaattgttaggattggtaataacaattgttttcattttttatgaaatctttcttct...
species | Oryza sativa |
transcript | LOC_Os03g36750.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCT GTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATTEST: gi|29625469|gb|CB630480.1|CB630480
genomic: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCTgtgagtaaca ... ctgaatgcagGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATT
EST: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCT GTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATTEST: gi|38473540|gb|CF957672.1|CF957672
genomic: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCTgtgagtaaca ... ctgaatgcagGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATT
EST: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCT GTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATTEST: gi|33797557|gb|CF324638.1|CF324638
genomic: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCTgtgagtaaca ... ctgaatgcagGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATT
EST: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCT GTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATTEST: gi|117242305|gb|CT842941.1|CT842941
genomic: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCTgtgagtaaca ... ctgaatgcagGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATT
EST: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCT GTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATTEST: gi|58589895|gb|CF988203.1|CF988203
genomic: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCTgtgagtaaca ... ctgaatgcagGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATT
EST: TAGGAAAAGGAGTGAAAGTTGGGGTATGCAGTACTTCAAATGAGAAAGCT GTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGEST: gi|29657434|gb|CB653709.1|CB653709
genomic: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCTgtgagtaaca ... ctgaatgcagGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTG
EST: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCT GTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATTEST: gi|29657435|gb|CB653710.1|CB653710
genomic: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCTgtgagtaaca ... ctgaatgcagGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATT
EST: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCT GTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATTEST: gi|58586453|gb|CF984761.1|CF984761
genomic: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCTgtgagtaaca ... ctgaatgcagGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATT
EST: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCT GTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATTEST: gi|29687538|gb|CB683813.1|CB683813
genomic: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCTgtgagtaaca ... ctgaatgcagGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATT
EST: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCT GTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATT
genomic: TAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCTgtgagtaaca ... ctgaatgcagGTTTCGGCAATAGTTTCATGTTTACTGGGCCCTGATCGTGCAGAAAAAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCTgtgagtaacacaatatttccaccttaaatgtacttttatgaagttaattgttaggattggtaataacaattgttttcattttttatgaaatctttcttct
- - - - - - - - - - - AAGGAG