1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAAATCTTGAGAGGCTgtaagttgtgattttgactggaaactggaagaacaattttgtccttgttttcattctgttagttctgacagataatctgacttgcag
species | Oryza sativa |
transcript | LOC_Os03g27990.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAAATCTTGAGAGGCT AAATCTTGAGAACAATAGCTTCACTGGGACTTTGCCTTEST: gi|33675549|gb|CF303788.1|CF303788
genomic: CTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAAATCTTGAGAGGCTgtaagttgtg ... tgacttgcagAAATCTTGAGAACAATAGCTTCACTGGGACTTTGCCTT
EST: CTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAAATCTTGAGAGGCT AAATCTTGAGAACAATAGCTTCACTGGGACTTTGCCTTACTCCATTTCCCAEST: gi|2317456|gb|C22510.1|C22510
genomic: CTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAAATCTTGAGAGGCTgtaagttgtg ... tgacttgcagAAATCTTGAGAACAATAGCTTCACTGGGACTTTGCCTTACTCCATTTCCCA
EST: CTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAAATCTTGAGAGGCT AAATCTTGAGAACAATAGCTTCACTGGGACTTTGCCTTACTCCATTTCCCAEST: gi|88349581|gb|CI653860.1|CI653860
genomic: CTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAAATCTTGAGAGGCTgtaagttgtg ... tgacttgcagAAATCTTGAGAACAATAGCTTCACTGGGACTTTGCCTTACTCCATTTCCCA
EST: CTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAAATCTTGAGAGGCT AAATCTTGAGAAEST: gi|88329310|gb|CI653224.1|CI653224
genomic: CTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAAATCTTGAGAGGCTgtaagttgtg ... tgacttgcagAAATCTTGAGAA
EST: CTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAAATCTTGAGAGGCT AAATCTTGAGAACAATAGCTTCEST: gi|88298816|gb|CI566013.1|CI566013
genomic: CTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAAATCTTGAGAGGCTgtaagttgtg ... tgacttgcagAAATCTTGAGAACAATAGCTTC
EST: CTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAA-TCTTGAGAGGCT AA-TCTTGAGAACA-TAGCTTCAC
genomic: CTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAAATCTTGAGAGGCTgtaagttgtg ... tgacttgcagAAATCTTGAGAACAATAGCTTCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGCTAGCAATAACAATCTTGGAGGAGGTGATATCCCTTATAATCTCCCTCCAAATCTTGAGAGGCTgtaagttgtgattttgactggaaactggaagaacaattttgtccttgttttcattctgttagttctgacagataatctgacttgcag
- - - - - - - - - - TTGGAG
- - - - - - - - - - TGGAGG
- - - - - - - - - - - GGAGGA
- - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG