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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGTCGAAGGTGTACCTGTTTTGCTTGCTAAGCCTCAAACATATATGAATCTCAGTGGTGAATCTgtaagcatcacttttagaagtctttccatgttttagtatctgatttctactattccttactatcttggaataagtctatttcgtgtcaactcttggcatg...

Basic information

species Oryza sativa
transcript LOC_Os03g22610.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g22610.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G896731_T02 (Zea mays), 5'ss of exon 4
GAATGGTCGAAGGTGTACCTGTTTTGCTTGCTAAGCCTCAAACATATATGAATCTCAGTGGTGAATCTgtaagcatcacttttagaagtctttccatgttttagtatctgatttctactattccttactatcttggaataagtctatttcgtgtcaactct-tggcatg-----
| ||||| || || || |||||| | ||||| ||||| || || ||||||||||||||||| |||||||||||   ||||| | |  || |||||  ||| |     |||  || ||||||||  || | |     | |  || | ||||        ||| ||| |||     
GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGAATCTCAGTGGAGAATCTgtaagtgacacttctgggcgtgtttcctagttct----cctgccttgtactattc--tattcttgcatactttgtttctttcactgattttctgtggtatgggcat

upper sequence: LOC_Os03g22610.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA05G28940.1 (Glycine max), 5'ss of exon 4
GAATGGTCGAAGGTGTACCTGTTTTGCTTGCTAAGCCTCAAACATATATGAATCTCAGTGGTGAATCTgtaagca-tcacttttagaagtctttccatgttttagtatctgatttc--tactattccttactatcttggaataagtctatttcgtgtcaactcttggcatg
|  | || |  |  || |||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||| | | |   |  |  | |||| | | |||   |     || |   || | | | ||| | |||   | |    | || | |  |    | | | ||  
GTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGAATCTCAGTGGTGAATCAgtaaggaattaagatgtgctgccttttcttttttctctcaaccatctagatattttgctttagtttctacaagttgtgccatctag-atacgttttggtca--

upper sequence: LOC_Os03g22610.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA08G12110.1 (Glycine max), 5'ss of exon 4
GAATGGTCGAAGGTGTACCTGTTTTGCTTGCTAAGCCTCAAACATATATGAATCTCAGTGGTGAATCTgtaagca--tcacttttagaagtctttccatgttttagtatctgatt-tctactattccttactatcttggaataagtctatttcgtgtcaactcttggcatg--
|  | || |  |  || |||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||| |  | |  | |  |    ||||| | || || ||||    | | || | | | ||| | |||    | || |   ||| |  |   |  |  || ||  
GTTTTGTTGGTGAAGTTCCTGTTTTCCTTGCAAAGCCTCAAACTTACATGAATCTCAGTGGTGAATCGgtaaggaattgagatgtgcagccttttcctttttctattatccatctatatattttgctttagtttct----acaaattccttttgattatgcattcagc-tgct