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TAGGGCCGCTGAGATTCTTGGACATAAGCGTGGCGAGAAGTTTGTACACCCTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTgtaagatttcactatttttttggccgtcattttaatgtgcatttacctttgctgatgttatgatttatgttgctgacattttcag
species | Oryza sativa |
transcript | LOC_Os03g21950.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACT GTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTGGTCCCAAGCEST: gi|42592105|gb|CK738591.1|CK738591
genomic: CTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTgtaagatttc ... acattttcagGTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGC
EST: CTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACT GTCATGTTCATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGCEST: gi|33795747|gb|CF323743.1|CF323743
genomic: CTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTgtaagatttc ... acattttcagGTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGC
EST: CTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACT GTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGCEST: gi|33676561|gb|CF304800.1|CF304800
genomic: CTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTgtaagatttc ... acattttcagGTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGC
EST: CTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACT GTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGCEST: gi|33674910|gb|CF303149.1|CF303149
genomic: CTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTgtaagatttc ... acattttcagGTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGC
EST: CTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACT GTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGCEST: gi|58681064|gb|CK069751.1|CK069751
genomic: CTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTgtaagatttc ... acattttcagGTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGC
EST: CTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACT GTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGCEST: gi|33676642|gb|CF304881.1|CF304881
genomic: CTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTgtaagatttc ... acattttcagGTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGC
EST: CTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACT GTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGC
genomic: CTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTgtaagatttc ... acattttcagGTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGGGCCGCTGAGATTCTTGGACATAAGCGTGGCGAGAAGTTTGTACACCCTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTgtaagatttcactatttttttggccgtcattttaatgtgcatttacctttgctgatgttatgatttatgttgctgacattttcag
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