1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGCATTCAAGCTTCCTGTTTCCCGCGTGATACACACTGTTGGGCCCATATATGATATGGACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACACgttagtcgtcctttctaaattgtatagtattacaagaaaatttgtggttgcctgcaaaatcagtgaaataactgttccgattgatgtgctaactgcag
species | Oryza sativa |
transcript | LOC_Os03g21830.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATATATGATATGGACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACAC AAATAGCTTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCEST: gi|27576271|gb|CA998965.1|CA998965
genomic: ATATATGATATGGACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACACgttagtcgtc ... ctaactgcagAAATAGCTTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACC
EST: ACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACAC AAATAGCTTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCEST: gi|86543827|gb|CI184033.1|CI184033
genomic: ACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACACgttagtcgtc ... ctaactgcagAAATAGCTTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACC
EST: TGGACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACAC TAATAGCTTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCEST: gi|88208196|gb|CI208045.1|CI208045
genomic: TGGACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACACgttagtcgtc ... ctaactgcagAAATAGCTTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACC
EST: ATATATGATATGGACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACAC AAATAGCTTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCEST: gi|27554299|gb|CA998199.1|CA998199
genomic: ATATATGATATGGACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACACgttagtcgtc ... ctaactgcagAAATAGCTTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACC
EST: ACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACAC AAATAGCTTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCEST: gi|86416263|gb|CI030274.1|CI030274
genomic: ACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACACgttagtcgtc ... ctaactgcagAAATAGCTTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACC
EST: ATATATGATATGGACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACAC AAATAGCTTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACC
genomic: ATATATGATATGGACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACACgttagtcgtc ... ctaactgcagAAATAGCTTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCATTCAAGCTTCCTGTTTCCCGCGTGATACACACTGTTGGGCCCATATATGATATGGACAAGCAACCTGAGGTCTCCTTAAATAATGCCTACACgttagtcgtcctttctaaattgtatagtattacaagaaaatttgtggttgcctgcaaaatcagtgaaataactgttccgattgatgtgctaactgcag
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