1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCACACAAAAGGACATATCAGCTATTACGTCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTGgttagtatatgcatctgacttacagtgatggctccttttctatttaacatatcgaccttcctttttggtatag
species | Oryza sativa |
transcript | LOC_Os03g21460.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTG TTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTACEST: gi|33687113|gb|CF315352.1|CF315352
genomic: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTGgttagtatat ... tttggtatagTTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTAC
EST: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTG TTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTACEST: gi|33808256|gb|CF330017.1|CF330017
genomic: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTGgttagtatat ... tttggtatagTTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTAC
EST: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTG TTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTACEST: gi|87022853|gb|CI269789.1|CI269789
genomic: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTGgttagtatat ... tttggtatagTTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTAC
EST: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTG TTCATTGCTGGTCGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTACEST: gi|33654738|gb|CF277352.1|CF277352
genomic: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTGgttagtatat ... tttggtatagTTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTAC
EST: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTG TTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTACEST: gi|218494169|gb|FG952751.1|FG952751
genomic: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTGgttagtatat ... tttggtatagTTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTAC
EST: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTG TTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTACEST: gi|2443021|gb|C74792.1|C74792
genomic: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTGgttagtatat ... tttggtatagTTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTAC
EST: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTG TTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTACEST: gi|86599871|gb|CI256033.1|CI256033
genomic: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTGgttagtatat ... tttggtatagTTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTAC
EST: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTG TTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTACEST: gi|66913473|gb|CX100321.1|CX100321
genomic: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTGgttagtatat ... tttggtatagTTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTAC
EST: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTG TTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTACEST: gi|33659109|gb|CF281722.1|CF281722
genomic: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTGgttagtatat ... tttggtatagTTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTAC
EST: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTG TTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTACEST: gi|88762168|gb|CI771724.1|CI771724
genomic: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTGgttagtatat ... tttggtatagTTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTAC
EST: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTG TTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTACEST: gi|33661942|gb|CF292909.1|CF292909
genomic: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTGgttagtatat ... tttggtatagTTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTAC
EST: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTG TTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTAC
genomic: TCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTGgttagtatat ... tttggtatagTTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACACAAAAGGACATATCAGCTATTACGTCACTAGTAAAGAGGAGGAAGATCCAGCAGTGTTTACTGGAGACACCTTGgttagtatatgcatctgacttacagtgatggctccttttctatttaacatatcgaccttcctttttggtatag
- - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA