1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGACATTGGTGGAATCAATGGCCTTCTCCATGTCAGCCAGATTAGTCATGACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAGgtattttttgcattcgtacttgagaaaagtatactatctaaagtttatagagctaaggccagagtattttttttaaatgctattag
species | Oryza sativa |
transcript | LOC_Os03g20100.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAG GTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACTEST: gi|18388863|gb|BM422061.1|BM422061
genomic: TGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAGgtattttttg ... atgctattagGTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACT
EST: CCCGTGTT-CCGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAG GTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACTEST: gi|218483682|gb|FG943816.1|FG943816
genomic: -CCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAGgtattttttg ... atgctattagGTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACT
EST: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAG GTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACTEST: gi|29638067|gb|CB643076.1|CB643076
genomic: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAGgtattttttg ... atgctattagGTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACT
EST: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAG GTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACTEST: gi|29662710|gb|CB658985.1|CB658985
genomic: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAGgtattttttg ... atgctattagGTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACT
EST: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAG GTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACTEST: gi|29660922|gb|CB657197.1|CB657197
genomic: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAGgtattttttg ... atgctattagGTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACT
EST: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAG GTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACTEST: gi|29645770|gb|CB650777.1|CB650777
genomic: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAGgtattttttg ... atgctattagGTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACT
EST: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAG GTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACTEST: gi|87010736|gb|CI312428.1|CI312428
genomic: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAGgtattttttg ... atgctattagGTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACT
EST: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAG GTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACTEST: gi|29660751|gb|CB657026.1|CB657026
genomic: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAGgtattttttg ... atgctattagGTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACT
EST: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAG GTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACTEST: gi|29638932|gb|CB643941.1|CB643941
genomic: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAGgtattttttg ... atgctattagGTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACT
EST: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAG GTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACTEST: gi|218480258|gb|FG945869.1|FG945869
genomic: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAGgtattttttg ... atgctattagGTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACT
EST: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAG GTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACT
genomic: ACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAGgtattttttg ... atgctattagGTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACATTGGTGGAATCAATGGCCTTCTCCATGTCAGCCAGATTAGTCATGACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAGgtattttttgcattcgtacttgagaaaagtatactatctaaagtttatagagctaaggccagagtattttttttaaatgctattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT