1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTCACGTGATGGAGGCCAAAATGTAATTGACTCTGTAGATGTCACATGCGGTCTCAGCTTAGGGGAATACACTGCACTTGCATTTGCTGGTGCCTTTAGgtatttcctttattctgttaataaaatcatgcatgcattattttgaaaaataagcacatggattcgtttcctattataggttgaacatacagtataggtt...
species | Oryza sativa |
transcript | LOC_Os03g18590.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGTCTCAGCTTAGGGGAATACACTGCACTTGCATTTGCTGGTGCCTTTAG CNTTGAAGGATGGTCTGAAGCTTGTCAAGCTTAGAGGAGAAGCCATGCAGEST: gi|29678024|gb|CB674299.1|CB674299
genomic: GGTCTCAGCTTAGGGGAATACACTGCACTTGCATTTGCTGGTGCCTTTAGgtatttcctt ... caacgtgtagCTTTGA-GGATGGTCTGAAGCTTGTCAAGCTTAGAGGAGAAGCCATGCAG
EST: GGTCTCAGCTTAGGGGAATACACTGCACTTGCATTTGCTGGTGCCTTTAG CTTTGAGGATGGTCTGAAGCTTGTCAAGCTTAGAGGAGAAGCCATGCAGEST: gi|58677960|gb|CK066647.1|CK066647
genomic: GGTCTCAGCTTAGGGGAATACACTGCACTTGCATTTGCTGGTGCCTTTAGgtatttcctt ... caacgtgtagCTTTGAGGATGGTCTGAAGCTTGTCAAGCTTAGAGGAGAAGCCATGCAG
EST: TGCATTTGCTGGTGCC-TTAG CTTTGAGGATGGTCTGAAGCTTGTCAAGCTTAGAGGAGAAGCCATGCAGEST: gi|25800454|gb|CA756415.1|CA756415
genomic: TGCATTTGCTGGTGCCTTTAGgtatttcctt ... caacgtgtagCTTTGAGGATGGTCTGAAGCTTGTCAAGCTTAGAGGAGAAGCCATGCAG
EST: GGTCTCAGCTTAGGGGAATACACTGCACTTGCATTTGCTGGTGCCTTTAG CTTTGAGGATGGTCTGAAGCTTGTCAAGCTTAGAGGAGAAGCCATGCAG
genomic: GGTCTCAGCTTAGGGGAATACACTGCACTTGCATTTGCTGGTGCCTTTAGgtatttcctt ... caacgtgtagCTTTGAGGATGGTCTGAAGCTTGTCAAGCTTAGAGGAGAAGCCATGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCACGTGATGGAGGCCAAAATGTAATTGACTCTGTAGATGTCACATGCGGTCTCAGCTTAGGGGAATACACTGCACTTGCATTTGCTGGTGCCTTTAGgtatttcctttattctgttaataaaatcatgcatgcattattttgaaaaataagcacatggattcgtttcctattataggttgaacatacagtataggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata