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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGGGATGAGGCATATTTCATGTCTCTCCTGAAAATCGCAGAAACTACTCATGGGCTTTATTACTCTTATGACAGGGATTTGACACTGAAgtaagtatcaagttatgcatgactgtggataggtcaactaaaatatctatctgttcacatccttgcaataaactttgtcactagttattttctgtcttatgagttattacttcgtag

Basic information

species Oryza sativa
transcript LOC_Os03g18080.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18080.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G047894_T04 (Zea mays), 5'ss of exon 4
AAAAGGGATGAGGCATATTTCATGTCTCTCCTGAAAATCGCAGAAACTACTCATGGGCTTTATTACTCTTATGACAGGGATTTGACACTGAAgtaagtatcaagttatgcatgactgtggataggtcaactaaaatat-----ctatctgttcacatccttgcaataaactttgtcactagttattttctgtcttatgagttattacttcgtag
| ||||||||||||||| |||||||||||||||| ||| ||||||||||||  |||  | ||||| || |||||||||||||||||||| ||||||||     || |||||||  | || ||| | |||| |||| |      ||   | |||| |      ||| || ||||||   |||| ||| |     |                    
AGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACTTGTGGATTGTATTATTCATATGACAGGGATTTGACACTAAAgtaagtgctttgtcatgcatgtatctgaataaggcaaccaaaagacattggcttaatattcagaaaaggccaacaacctttgt--gtagtgattatgcacat--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88298501|gb|CI563496.1|CI563496
EST:     AAACTACTCATGGGCTTTATTACTCTTATGACAGGGATTTGACACTTGAA                         CTTGCAGAGGGCATCAAAAGTTGCCTGCTGGGCGGGTACATAAGCCAACT
genomic: AAACTACTCATGGGCTTTATTACTCTTATGACAGGGATTTGACACT-GAAgtaagtatca ... tacttcgtagCTTGCAGAGGGCATCAAA-GTTGCCTGCTGGGCGGGTACATAAGCCA-CT
EST: gi|117222519|gb|CT845898.1|CT845898
EST:     GAAACTACTCATGGGCTTTATTACTCTTATGACAGGGATTTGACACTGAA                         CTTGCAGAGGGCATCAAAGTTGCCTGCTGGGCGGGTACATAAGCCACTCTG
genomic: GAAACTACTCATGGGCTTTATTACTCTTATGACAGGGATTTGACACTGAAgtaagtatca ... tacttcgtagCTTGCAGAGGGCATCAAAGTTGCCTGCTGGGCGGGTACATAAGCCACTCTG
EST: gi|29624693|gb|CB629704.1|CB629704
EST:     GAAACTACTCATGGGCTTTATTACTCTTATGACAGGGATTTGACACTGAA                         CTTGCAGAGGGCATCAAAGTTGCCTGCTGGGCGGGTACATAAGCCACTCTG
genomic: GAAACTACTCATGGGCTTTATTACTCTTATGACAGGGATTTGACACTGAAgtaagtatca ... tacttcgtagCTTGCAGAGGGCATCAAAGTTGCCTGCTGGGCGGGTACATAAGCCACTCTG