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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTGCAGTTAAAGAGAAACTAGAGTCTCTTTGTAGGGAGTTTCAGCGTCAAAATAAAATGCTAAAGgtatggaacaagtgtatcgagttttgaagtgtctgtttattttcacttttgttcaactataatatcttttagcgttgatgactcag

Basic information

species Oryza sativa
transcript LOC_Os03g17930.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g17930.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G107731_T02 (Zea mays), 5'ss of exon 6
CTATTGCAGTTAAAGAGAAACTAGAGTCTCTTTGTAGGGAGTTTCAGCGTCAAAATAAAATGCTAAAGgtatggaacaagtgtatc-gagttttgaagtgt--ctgttta---------ttttcacttttgttcaactataatatc-ttttagcgttgatgactcag
| |||||||| ||||| | |||||| |||||||||||||| |||||||||||||| |||||||||||||||||     |||||||  ||  ||||||      | || ||         || ||| |||||||||| ||| ||| | |||||||||   || |||||
CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAGgtatgt--tcagtgtatttgaactttgaaacaaagcggtataaaagagttcttatcatttttgttcaattatcataccattttagcgtctttgtctcag

upper sequence: LOC_Os03g17930.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G015730_T03 (Zea mays), 5'ss of exon 6
CTATTGCAGTTAAAGAGAAACTAGAGTCTCTTTGTAGGGAGTTTCAGCGTCAAAATAAAATGCTAAAGgtatg----gaacaagtgtatcgagttttgaagtgtct------gtttattttcacttttgttc--aactataatatc-ttttagcgttgatgactcag
| |||| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    |   |  |||     |  |  ||| |           || |||||| |||| ||   || | | ||| | ||||||| |   |  |||||
CCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCAAAACAAAATGCTAAAGgtatgttcagtgtatttgttctttgaatcaaagcgctataaaagagttcttttcaatttttttttaaatttttataccattttagcatctttatctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40490411|gb|BX899913.1|BX899913
EST:     AACTAGAGTCTCTTTGTAGGGAGTTTCAGCGTCAAAATAAAATGCTAAAG                         GAAGAGTGCCGAAGGGTGTCAACAGAGGGGCAGAATATGCGGATGGAGTTA
genomic: AACTAGAGTCTCTTTGTAGGGAGTTTCAGCGTCAAAATAAAATGCTAAAGgtatggaaca ... gatgactcagGAAGAGTGCCGAAGGGTGTCAACAGAGGGGCAGAATATGCGGATGGAGTTA
EST: gi|29639433|gb|CB644442.1|CB644442
EST:     AACTAGAGTCTCTTTGTAGGGAGTTTCAGCGTCAAAATAAAATGCTAAAG                         GAAGAGTGCCGAAGGGTGTCAACAGAGGGGCAGAATATGCGGATGGAGTTA
genomic: AACTAGAGTCTCTTTGTAGGGAGTTTCAGCGTCAAAATAAAATGCTAAAGgtatggaaca ... gatgactcagGAAGAGTGCCGAAGGGTGTCAACAGAGGGGCAGAATATGCGGATGGAGTTA
EST: gi|33809156|gb|CF330462.1|CF330462
EST:     AACTAGAGTCTCTTTGTAGGGAGTTTCAGCGTCAAAATAAAATGCTAAAG                         GAAGAGTGCCGAAGGGTGTCAACAGAGGGGCAGAATATGCGGATGGAGTTA
genomic: AACTAGAGTCTCTTTGTAGGGAGTTTCAGCGTCAAAATAAAATGCTAAAGgtatggaaca ... gatgactcagGAAGAGTGCCGAAGGGTGTCAACAGAGGGGCAGAATATGCGGATGGAGTTA