Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAGgtagctctatccactgattgtactgtcatagttatcttgcttaattttttgggcaacacattgtttccttcataaatgaagaccatgatgctatgatgctctattttacag

Basic information

species Oryza sativa
transcript LOC_Os03g17920.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g17920.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G158261_T01 (Zea mays), 5'ss of exon 4
ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAGgtagctctat-ccactgattgtact-gtcatagttatcttgctt--aattttttgg-gcaacacattgtttccttca----taaatgaagaccatgatg----ctatgatgctctattttacag---------------------------
||||| || ||||||||||||| ||||||||||||||||| |||   |||  | | | || || |     ||  | || ||||| ||  |   ||| |      |||    |||||||||||      |  ||  |     | | |      || |  ||  ||  ||                              
ATAACCGTTGATGGTGAAGTTGTCACTGATCCAGATATGACTCTGGTgtaatttttttcctctcagcaagcttattattgttatattcttcccaatctccaattgcattcgattgtttcctttggttctgtatttattttttaaagaagttcataaaccttaataatatgacaggtacctaagctaactcttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33799285|gb|CF325499.1|CF325499
EST:     ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCT-AG                         GGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGC
genomic: ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAGgtagctctat ... tattttacagGGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGC
EST: gi|88425251|gb|CI564768.1|CI564768
EST:     ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAG                         GGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGC
genomic: ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAGgtagctctat ... tattttacagGGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGC
EST: gi|88388351|gb|CI627890.1|CI627890
EST:     ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAG                         GGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCC-TTCGC
genomic: ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAGgtagctctat ... tattttacagGGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGC
EST: gi|88392883|gb|CI614765.1|CI614765
EST:     ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAG                         GGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCCGGAGCC-TTCGC
genomic: ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAGgtagctctat ... tattttacagGGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGC
EST: gi|88317451|gb|CI628100.1|CI628100
EST:     ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAG                         GGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGC
genomic: ATAACAGTAGATGGTGAAGTTGCCACTGATCCAGATATGATTCTCAGgtagctctat ... tattttacagGGAGGGTTCTAAGTTGGTATATCATCGCTTACCATGGCAGGAGCCCTTCGC