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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTCCTCCCTGTGAAGACACTGAGGGTCTTGCTGGTGGAGAATGATGACTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAGgtatgcactgcaaattgcaataccaatttattgttaataagtttttctattttccgagggaagttaaattacttttatgatcacatattcgtattggaga...

Basic information

species Oryza sativa
transcript LOC_Os03g17570.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g17570.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G095727_T03 (Zea mays), 5'ss of exon 5
AGGTTCCTCCCTGTGAAGACACTGAGGGTCTTGCTGGTGGAGAATGATGACTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAGgtatgcactgcaaattgcaataccaatttattgttaataagtttttctattttccgagggaagttaaattacttttatgatcacat-attcgtattggaga
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||| || |||||||||| || |||||||| | ||  | |||||  | || ||   | | ||   |     |||  || |  | |  || |||  | | |  |  |  ||| ||  
AGGTTCCTACCTGTGAAGACACTGAGAGTCTTGCTGGTGGAGAATGATGACTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAGgtacgcgctgcaaatggtaaagctaatttgat-ttgatttttctctcgcatcaaacaggagagctgcaatcattatatactaagaagaaactaatttgatt

upper sequence: LOC_Os03g17570.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA13G19870.1 (Glycine max), 5'ss of exon 1
AGGTTCCTCCCTGTGAAGACACTGAGGGTCTTGCTGGTGGAGAATGATGACTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAGgtatgc-actg-caaattgcaataccaatttattgttaataagtttttctattttccgagggaagttaaattacttttatgatcacatattcgtattggaga--
|||||  | | | | |   | || | ||||||||| |||||| ||||||||||||||||||| || ||||  ||||||||||| || ||| |||||||||||  |  | |  |   ||  |||   ||||  |||||  |  | ||   | ||   |   |    || ||| |||  | |  |  |||  ||  |||  |    
AGGTTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAGTATGATGACTCTACCCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGgttagttattatctgtttataatgg-aattccttgtttgtctggttagat-ttggacaccgaccttttaataactactgt--ttgcattgtcagattttatgtt

upper sequence: LOC_Os03g17570.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA10G05520.1 (Glycine max), 5'ss of exon 1
AGGTTCCTCCCTGTGAAGACACTGAGGGTCTTGCTGGTGGAGAATGATGACTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAGgtatgcactgcaaattgcaataccaatttattgttaataagtttttctattttccgagggaagttaaattactttta-tgatcacatattcgtattggaga--
|||||  | | | | |   | || | ||||||||| ||||||| |||||||||||||||||| || ||||  ||||||||||| || ||| |||||||||||    | | |  ||     ||  |    ||| || ||  ||||   ||  |   ||           | ||   || || |  |||  ||  |||  |    
AGGTTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAGATTGATGACTCTACCCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGgt---tagttcttatccgtttataatggaattatttatttgtttggttaggtctggacactgaccttttaacaactactgtttgcattgtcaaattttatgtt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29665633|gb|CB661908.1|CB661908
EST:     CTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAG                         TTATCCCTGCTGAAAATGGGCTACATGCATGGCAATGTCTTG
genomic: CTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAGgtatgcactg ... ttcattctagTTATCCCTGCTGAAAATGGGCTACATGCATGGCAATGTCTTG
EST: gi|29642421|gb|CB647428.1|CB647428
EST:     CTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAG                         TTATCCCTGCTGAAAATGGGCTACATGCATGGCAATGTCTTGAAGATCTGC
genomic: CTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAGgtatgcactg ... ttcattctagTTATCCCTGCTGAAAATGGGCTACATGCATGGCAATGTCTTGAAGATCTGC
EST: gi|29642419|gb|CB647426.1|CB647426
EST:     CTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAG                         TTATCCCTGCTGAAAATGGGCTACATGCATGGCAATGTCTTGAAGATCTGC
genomic: CTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAGgtatgcactg ... ttcattctagTTATCCCTGCTGAAAATGGGCTACATGCATGGCAATGTCTTGAAGATCTGC