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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCCGGGACACCCTGCACTAGATGAGGACGGGAGAAATGCTTTGCGACGGTTATTAACAGCATATGCAAGGCATAACCCATCAGTTGGATACTGCCAGgtgaacaaatgctcattggataattttatgttagtttttaacctcttgtaatctactccctccgtcccataatataagggattttgagtttttgcttgca...

Basic information

species Oryza sativa
transcript LOC_Os03g17540.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g17540.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G095868_T03 (Zea mays), 5'ss of exon 5
ATTTCCGGGACACCCTGCACTAGATGAGGACGGGAGAAATGCTTTGCGACGGTTATTAACAGCATATGCAAGGCATAACCCATCAGTTGGATACTGCCAGgtgaacaaatgctcattggataattttatgttagtttttaacctcttgtaatctactccctccgtcccataatataagggattttgagtttttgcttgca--
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ATTTCCAGGACACCCTGCATTAGATGAGGATGGGAGGAATGCTTTGAGGCGGTTATTAACCGCATATGCAAGGCATAATCCATCAGTTGGGTATTGCCAGgtagatgccaattgaaggaattttgtcattttgatttttta--tgtagcctcttgctatcttaatcgtatagaacaaggtagattgtaatcctaattggtgc

upper sequence: LOC_Os03g17540.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G154883_T02 (Zea mays), 5'ss of exon 5
ATTTCCGGGACACCCTGCACTAGATGAGGACGGGAGAAATGCTTTGCGACGGTTATTAACAGCATATGCAAGGCATAACCCATCAGTTGGATACTGCCAGgtgaacaaatgctcattggat-aattttatgttagtt-tttaacctcttgtaatctactccctccgtcccataatataagggattttgagtttttgcttgca
|||||| |||||||||||| |||||||||| ||||| ||||||||| | ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| ||   ||||  |||| |  |||||| | ||  || | || ||||||||   ||      |          ||| |  | | |   | ||  ||| ||  
ATTTCCAGGACACCCTGCATTAGATGAGGATGGGAGGAATGCTTTGAGGCGGTTGTTAACCGCATATGCAAGGCATAATCCATCAGTTGGGTACTGCCAGgtaaattgatgccaattgaaggaattttgttttttttatctagcctcttgttggcttaattgtattgaatgagatagattgtaatcctaattggtgcatg--