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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctacattctcagtgcatttagttcatgaactattgttacatactagtaataaagttttactgctagcaagttttttcgttcaaaatttgagaaa...

Basic information

species Oryza sativa
transcript LOC_Os03g16980.4
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 3
GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctacattctcagtgcatttagttcatgaactattgttacatactagtaataaagttttactgctagcaagttttttcgttcaaaatttgagaaa-
|||||||| || || ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||     ||    |   |      | || |   | | |   |     ||   |    |   | |  | ||  ||   |      ||||   |  | ||| 
GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaa-ataactagttagctatgcacatttaagatattttaagtcttctctttcagaggatcctgaaagttatgaaccctggatagtcaatgataaataaac

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 4
GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctacattctcagtgcatttagttcatgaactattgttacatactagtaataaagttttactgctagcaa-gttttttcgttcaaaatttgagaaa----
|||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||    ||  |  | ||  |||  | | | | |   ||| |||  | ||     | |  |  | |||  ||  | |  |  | | | | |   ||| |||    
GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTCATCCGCCATGgta--aataactagttag-acatgca-tgcttaagacatt-ttaagtcctccctttcagatgatcctgaaagttatgcatcctggattagacaatgataaataaa

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 4
GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctacattctca-gtgc-atttagttcatgaactattgttacatactagtaataaagttttactgctagcaagttttttcgttcaaaatttgagaaa--
|||||||| || || ||||  |||||||| ||||| |||||||| || || ||||| || || |||||||| ||||| || |||||||||||  ||||||| |   || | ||| |     | ||||||   || ||   | |  |   |  |   || |||   |    || | | | | ||||    |  
GTCATTGTTGCTGATAACTACTTCACTGGATCAAAGGACAACCTCAAAAAATGGATTGGTCATCCAAGATTCGAGCTTATTCGTCATGgtat-actacattttttcgtactattcaacgtgtcaactatctataaat-taaattgttgggcata--tgatagagtgaaggttagattatattttgtctcatt

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 5
GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctacattctcagtgcatttagttcatgaactattgttacatactagtaataaagttttactgctagcaagttttttcgttcaaaatttgagaaa--
|| ||||| || |||||||  |||||||| || || |||||||| || || ||||| || || |||||||||||||| |||||||||||||| |    ||  |   |   | |     || ||      | | ||  |   | ||     |  || ||    || ||||   || |   | | |      
GTAATTGTTGCTGACAACTACTTCACTGGATCCAAGGACAACCTCAAAAAATGGATAGGTCATCCAAGATTTGAGCTTATCCGTCATGgtatagtctaatctttgtttactatcaactatcaaaggcattaaaattgtcacattaggcagtatctcct--tgagcttttaaatttagtttgtcaactggt

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 3
GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctacatt------ctcagtgcatttagttcatgaactattgttacatactagtaataaagttttactgctagcaagttttttcgttcaaaatttgagaaa
|||||||| || |||||||| |||||||| || ||||||||||| || || ||||| || || |||||||| |||||||| |||||||||||   |  | |       ||| |||| | | ||||   |||    |||  |  |  |  |  | | | | |  |   || |   |     | ||  | ||| | 
GTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGgtataattttactgttctcttcattgcaatca-ttcacagactgggattaatt--tgatggtttattctcaattgttctaaatcagtc---accaatgtagagcag

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 4
GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctacatt-ctcagtgcatttagttcatgaactattgttacatactagtaataaagttttactgctagcaagtttt--ttcgttcaaaatttgagaaa-
|||||||| || |||||||  |||||||| || ||||||||||| || |  ||||| || || ||||||||||||||||| |||||||||||   |  | |  ||  | ||||    ||||     |  |||    | || |  | | | |||| |   |     | |   |  |||   ||| |     | 
GTCATTGTTGCTGACAACTACTTCACTGGATCTAAAGACAACCTTAAAAGATGGATTGGCCATCCAAGATTTGAGCTAATTCGTCATGgtataattttactattctcttcattgcaatcat---tcacagtttgggattaatt-tgatggtttattctcaattgttctaaatcagttaccaatgtagagcag

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 4
GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctacattctcagtgc-atttagttcatgaactattgttacatactagtaataaagttttactgctagcaagttttttcgttcaaaatttgagaaa---
|||||||| || |||||||  |||||||| ||||| |||||||| || || ||||| || || |||||||||||||| ||||||||||||||  || |||| |   | | ||| |  |  | ||| ||   || | | ||  | ||  ||     || |||   |    || | | | | ||||    |   
GTCATTGTTGCTGACAACTACTTCACTGGATCAAAGGACAACCTCAAAAAATGGATTGGTCATCCAAGATTTGAGCTTATCCGTCATGgtat-actccattttgtttactattcaacttctcaaccat--ctaaaaattaa-attattgtgcatatgatagactgaagattagattatattttgtctcattt

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA15G04500.2 (Glycine max), 5'ss of exon 5
GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgc--tacattctcagtgcatttagttcatgaactattgttac-atactagtaataaagttttactgctagcaagttttttcgttcaaa-atttgagaaa
|||||||| || |||||||  |||||||| || || || ||||| || |||||||| || || |||||||||||||| |||||||||||||| |   | |||  |   |   | |     || ||||||   | | ||   | |  | |  | |||     |  ||  |||||  || |   || |      
GTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCATGgtatagtctttcatctttgtttactgtcaactatcaactatcaatgccattaaaattgtcacatgttagatgcactaaagttttttattgatttatcttt----

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 4
lower sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 3
------------GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctacattctcagtgcatttagttcatgaactattgttacatactagtaataaagttttactgctagcaagttttttcgttcaaaatttgagaaa
            || || || || || || |  ||||| || ||||||||||| || ||||| ||||| || || ||||||||||||||||| ||||||||||| | ||  |||| | |  ||  |  | |       ||  |||  | ||   | ||   |  | |  ||   | | || |  ||     ||| ||   
GAAAAGAATGAAGTAATCGTTGCGGATAATTACTTCACAGGATCAAAAGACAATCTCAAGAAATGGATTGGTCATCCAAGATTTGAGCTAATTCGTCATGgtatag-tatcttcttaattaatcaaacttac------ttaatactcattaaccaaaacaatgcattaatactcattcttgtgattt----tttcag---

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 4
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 3
GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac---attctcagtgcatttagttcatgaactattgttacatactagtaataaagttttactgctagcaagttttttcgttcaaaatttgagaaa
||  |||| || || |||| ||||||||| |||||||| ||||| |||||||||||||| ||||| || ||||| || || ||||| ||||| |   |   | |||||||   ||  ||| |    ||  |  | |||   |  ||  |    | |  |  | |    |||    ||     ||| |  | 
GTGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAGTGGATCGGTCACCCCAGGTTTGAACTTATTCGTCACGgtatggtctcgagactctcagtttgtt--gttaagcgtcttcttgttcatgtcaacaa-gatccatcatcgtgatctctatttggaatttgggctttaaacag

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 4
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 5'ss of exon 4
GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgct---acattctcagtgcatttagttcatgaactattgttacatactagtaataaagttttactgctagcaagttttttcgttcaaaatttgagaaa
|| ||||| || || |||| ||||||||||||||| |||||||| ||||||||||| || || |||||||||||||| |||||||| ||||| | |   | |||||| |     ||  | |       | ||  | || |  ||  |    || | ||         | |||| |||     ||| | |  
GTGATTGTTGCTGATAACTATTTCACTGGTTCAAAGGACAACCTTAAGAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCACGgtatggttttgaaattctctggcttgttgctgctattgagaatggaatattcctgtctt----ttgttctatccatttatattttggttttgggtttaacag-

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 4
GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgta---ttgctacattctcagtgcatttagttcatgaactattgttacatactagtaataaagttttactgctagcaagttttttcgttcaaaatttgagaaa-
|| ||||| || || ||||  ||||| ||||| || ||||| || ||||| ||||| || || |||||||||||||| || ||||||||||   ||  ||  || | | | |||||  ||     |  |    | ||||   || ||   ||||      | | |  |   |||     ||   |||     
GTAATTGTTGCCGATAACTACTTCACCGGTTCTAAGGACAATCTCAAGAAATGGATTGGTCATCCAAGATTTGAGCTTATTCGTCATGgtaagttttttatctttttactccattttatttt---atcacatatgcatatgcgtcattt-gtttggaatttgggatatcccttcagatgaatcctgattggt

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv13s0019g00840.t01 (Vitis vinifera), 5'ss of exon 4
GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgcta-cattctcagtgcatttagttcatgaactattgttacatactagtaataaagttttactgctagcaagttttttcgttcaa--aatttgagaaa
|| ||||| || || ||||  |||||||| || ||||| ||||||| ||| ||||| || || |||||||||||||| || ||||||||||||  |  ||||  |  ||   |||     || || |   | |   |||  |||     |||   ||  |     ||| || | |  |    ||   |   
GTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAATGGATTGGTCATCCAAGATTTGAGCTTATTCGTCATGgtattattctcatttgctttgtcattacaaggtggac-acaatca-ggactgttaaacgcctttccttgtcaagttctttatttgctggatgggttcatgtc-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88851974|gb|CI679532.1|CI679532
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTG
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTG
EST: gi|58677155|gb|CK065842.1|CK065842
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|33680606|gb|CF308845.1|CF308845
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|33658124|gb|CF280738.1|CF280738
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGCGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58678023|gb|CK066710.1|CK066710
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|30229035|gb|CB966926.1|CB966926
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58665123|gb|CK053809.1|CK053809
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|163923367|gb|EG711100.1|EG711100
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|25800080|gb|CA756041.1|CA756041
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|88406887|gb|CI578415.1|CI578415
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGC
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGC
EST: gi|163927504|gb|EG710716.1|EG710716
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|30226568|gb|CB964460.1|CB964460
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|88729590|gb|CI751393.1|CI751393
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCA
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCA
EST: gi|313080404|gb|HO213412.1|HO213412
EST:     CAATCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58662662|gb|CK051348.1|CK051348
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|33675428|gb|CF303667.1|CF303667
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58668375|gb|CK057061.1|CK057061
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58601617|gb|CK012145.1|CK012145
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58682312|gb|CK070999.1|CK070999
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|29668646|gb|CB664921.1|CB664921
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58664972|gb|CK053658.1|CK053658
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|88388345|gb|CI627884.1|CI627884
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCC
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCC
EST: gi|428184|gb|D24332.1|D24332
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|88372446|gb|CI610769.1|CI610769
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58654932|gb|CK043612.1|CK043612
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|29637729|gb|CB642738.1|CB642738
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58672962|gb|CK061648.1|CK061648
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|30226636|gb|CB964528.1|CB964528
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|88370196|gb|CI585201.1|CI585201
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGC
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGC
EST: gi|58686439|gb|CK075126.1|CK075126
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58659240|gb|CK047920.1|CK047920
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58666035|gb|CK054721.1|CK054721
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58664219|gb|CK052905.1|CK052905
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58661516|gb|CK050196.1|CK050196
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTA
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTA
EST: gi|38476842|gb|CF960975.1|CF960975
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|14192538|gb|AU184749.1|AU184749
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58664364|gb|CK053050.1|CK053050
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|88407211|gb|CI581298.1|CI581298
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|33676960|gb|CF305199.1|CF305199
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCATGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|163923610|gb|EG715331.1|EG715331
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58659773|gb|CK048453.1|CK048453
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58590735|gb|CF989043.1|CF989043
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|88382988|gb|CI683086.1|CI683086
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGAC
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGAC
EST: gi|58660955|gb|CK049635.1|CK049635
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58672357|gb|CK061043.1|CK061043
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58655602|gb|CK044282.1|CK044282
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|33380802|gb|CF196145.1|CF196145
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|30228342|gb|CB966233.1|CB966233
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|33813747|gb|CF332760.1|CF332760
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58590704|gb|CF989012.1|CF989012
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|88351656|gb|CI617381.1|CI617381
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58595983|gb|CK006511.1|CK006511
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|58666725|gb|CK055411.1|CK055411
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|88410819|gb|CI578625.1|CI578625
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAA
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAA
EST: gi|88294549|gb|CI584675.1|CI584675
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTAT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTAT
EST: gi|88350787|gb|CI619045.1|CI619045
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGA
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGA
EST: gi|58656016|gb|CK044696.1|CK044696
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGGGTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|29668686|gb|CB664961.1|CB664961
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
EST: gi|88371205|gb|CI597682.1|CI597682
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGC
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGC
EST: gi|14981678|gb|BI306356.1|BI306356
EST:     CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG                         ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctac ... ttcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctacattctcagtgcatttagttcatgaactattgttacatactagtaataaagttttactgctagcaagttttttcgttcaaaatttgagaaa

- - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA