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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGGTGCATGTCCCGCCGACCATAGCTCTCGCCACACGAGGCCGTTTGCAGAGCCTTAGGCTCCAACTTGCGCTACTTGACCGCGAGTTCGATGATTTAGgtgatacactttattcacttaggttaattcatatactgcttcttactctcctgcaagcattacattgtagctgatgttttgcttgcag

Basic information

species Oryza sativa
transcript LOC_Os03g16570.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g16570.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G492252_T02 (Zea mays), 5'ss of exon 4
CGGGTGCATGTCCCGCCGACCATAGCTCTCGCCACACGAGGCCGTTTGCAGAGCCTTAGGCTCCAACTTGCGCTACTTGACCGCGAGTTCGATGATTTAGgtgatacactttattcacttaggttaattcatatactgcttcttact--ctcctgcaagcattacattgtagctgatgttttgcttgcag
|| |||||||| ||||||||||| || || || ||  ||||||  || ||||||||||| || ||||| || || |||||||| || || |||||||||||||   ||    || || |    || | |||| |  || ||   | |   ||||| || | |      || |      ||||| || |||
CGTGTGCATGTACCGCCGACCATTGCCCTTGCTACGAGAGGCCAGTTACAGAGCCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAGgtgtgcca----atacattccatttgactcatttgatggtttacagtgtttcctgaaaacttagtgacgtggaattctttttgttt-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218484447|gb|FG955624.1|FG955624
EST:     GAGCCTTAGGCTCCAACTTGCGCTACTTGACCGCGAGTTCGATGATTTAG                         ATTATGATGCCCTTAGGGCCTTGGATGCAGACAATAGCCCTCATGCTCCTT
genomic: GAGCCTTAGGCTCCAACTTGCGCTACTTGACCGCGAGTTCGATGATTTAGgtgatacact ... ttgcttgcagATTATGATGCCCTTAGGGCCTTGGATGCAGACAATAGCCCTCATGCTCCTT
EST: gi|218498707|gb|FG952314.1|FG952314
EST:     GAGCCTTAGGCTCCAACTTGCGCTACTTGACCGCGAGTTCGATGATTTAG                         ATTATGATGCCCTTAGGGCCTTGGATGCAGACAATAGCCCTCATGCTCCTT
genomic: GAGCCTTAGGCTCCAACTTGCGCTACTTGACCGCGAGTTCGATGATTTAGgtgatacact ... ttgcttgcagATTATGATGCCCTTAGGGCCTTGGATGCAGACAATAGCCCTCATGCTCCTT