1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AACGTGCAGGCGTTAGGCTTGAAGCAACATTGGGCTAATTCTACCGGAGAAGCCAAATAATATCATATCTAACAGTTGGTCTGGAAGGTTACTCTTCATGgcaagtgccaattttttttccattttctgttatgatgcgtgaaactatcttgtagatgtagatatattgattatggaaggatgaagttgccaattgacctgaggcggtttccttctgcag
species | Oryza sativa |
transcript | LOC_Os03g16110.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCCAAATAATATCATATCTAACAGTTGGTCTGGAAGGTTACTCTTCATG CCAGGAAAAATCTGAATATGGAGTTTCTGTTTGGTAGTTTCACTATTTAAAEST: gi|58690664|gb|CK079351.1|CK079351
genomic: AGCCAAATAATATCATATCTAACAGTTGGTCTGGAAGGTTACTCTTCATGgcaagtgcca ... ccttctgcagCCAGGAAAAATCTGAATATGGAGTTTCTGTTTGGTAGTTTCACTATTTAAA
EST: AGCCCAATAATATCATATCTAACAGTTGGTCTGGAAGGTTACTCTTCATG CCAGGAAAAATCTGAATATGGAGTTTCTGTTTGGTAGTTTCACTATTTAAAEST: gi|88831113|gb|CI080537.1|CI080537
genomic: AGCCAAATAATATCATATCTAACAGTTGGTCTGGAAGGTTACTCTTCATGgcaagtgcca ... ccttctgcagCCAGGAAAAATCTGAATATGGAGTTTCTGTTTGGTAGTTTCACTATTTAAA
EST: AGCCAAATAATATCATATCTAACAGTTGGTCTGGAAGGTTACTCTTCATG CCAGGAAAAATCTGAATATGGAGTTTCTGTTTGGTAGTTTCACTATTTAAAEST: gi|88835114|gb|CI370417.1|CI370417
genomic: AGCCAAATAATATCATATCTAACAGTTGGTCTGGAAGGTTACTCTTCATGgcaagtgcca ... ccttctgcagCCAGGAAAAATCTGAATATGGAGTTTCTGTTTGGTAGTTTCACTATTTAAA
EST: AGCCAAATAATATCATATCTAACAGTTGGTCTGGAAGGTTACTCTTCATG CCAGGAAAAATCTGAATATGGAGTTTCTGTTTGGTAGTTTCACTATTTAAA
genomic: AGCCAAATAATATCATATCTAACAGTTGGTCTGGAAGGTTACTCTTCATGgcaagtgcca ... ccttctgcagCCAGGAAAAATCTGAATATGGAGTTTCTGTTTGGTAGTTTCACTATTTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACGTGCAGGCGTTAGGCTTGAAGCAACATTGGGCTAATTCTACCGGAGAAGCCAAATAATATCATATCTAACAGTTGGTCTGGAAGGTTACTCTTCATGgcaagtgccaattttttttccattttctgttatgatgcgtgaaactatcttgtagatgtagatatattgattatggaaggatgaagttgccaattgacctgaggcggtttccttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG