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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCCAAAGGCCTTTTCCAGTGCAGATACAGCTTATGTCCTTGCTTATTCAGTCATAATGCTCAACACCGATGCACATAATCCAATGGTAAAAAATAAGgtatgtatcttattggctaagtttttgtgtaatataccatagacagcctttggttctgttgtgatgtattaattaatgcag

Basic information

species Oryza sativa
transcript LOC_Os03g14260.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g14260.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G058870_T01 (Zea mays), 5'ss of exon 4
CAACCCAAAGGCCTTTTCCAGTGCAGATACAGCTTATGTCCTTGCTTATTCAGTCATAATGCTCAACACCGATGCACATAATCCAATGGTAAAAAATAAGgtatgtatcttattggctaagtttttgtgtaatataccatagacagcctttggttctgttgtgatgtattaattaatgcag
 || ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||  | |||| | |   | ||| || ||     | |        |  ||      |  ||| |  | ||| |  ||||||
TAATCCAAAGGCCTTTTCCAGTGCAGATACAGCTTATGTTCTGGCTTATTCAGTCATAATGCTTAACACTGATGCACATAACCCAATGGTCAAAAATAAGgtactt-tcttgtggtgaaggttcttttgcggagttct-------ggtttacacaattatgtaacatgttactcgatgcag

upper sequence: LOC_Os03g14260.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA03G02610.1 (Glycine max), 5'ss of exon 4
CAACCCAAAGGCCTTTTCCAGTGCAGATACAGCTTATGTCCTTGCTTATTCAGTCATAATGCTCAACACCGATGCACATAATCCAATGGTAAAAAATAAGgtatgt-----atcttattggc---taagtttttgtgtaa-----tataccatagacagcctttggttctgttgtgatgtattaattaatgcag
 || |||||||||||||| ||||| || ||||| ||||||||||| ||||| || ||||||||||| || ||||| || ||||| ||||| || |||||||| ||      ||| ||| |     ||| ||  |||  ||     |||  || | |       |  || | || |    | || | | ||||||
TAATCCAAAGGCCTTTTCTAGTGCTGACACAGCATATGTCCTTGCCTATTCTGTTATAATGCTCAATACAGATGCTCACAATCCTATGGTGAAGAATAAGgtgtgctcacaatcctatagttctgtaaattgatgtacaaataattatgtcagacatgatggcttattttctttttggttgttgagttatgcag

upper sequence: LOC_Os03g14260.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA09G40480.1 (Glycine max), 5'ss of exon 4
CAACCCAAAGGCCTTTTCCAGTGCAGATACAGCTTATGTCCTTGCTTATTCAGTCATAATGCTCAACACCGATGCACATAATCCAATGGTAAAAAATAAGgtatgt-------atcttattggctaagtttttgtgtaata-----taccatagacagcctttggttctgttgtgatgtattaattaatgcag
 || ||||| | |||||| ||||| |||||||| ||||||||||| ||||| || ||  |||| || |||||||| || ||||| ||||| ||||| |||||  |        ||  ||   | | | ||||  | | ||      ||  ||| |     |  |||||  || |  |  ||| | | ||||||
TAATCCAAAAGTCTTTTCTAGTGCTGATACAGCATATGTCCTTGCATATTCTGTGATTCTGCTTAATACCGATGCTCACAATCCTATGGTGAAAAACAAGgtgcggtctgtcaattctagaagttga-ttttcatatgattgtgattatgatatatgtaatgaggttc--tttttgttcattgagttatgcag

upper sequence: LOC_Os03g14260.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA18G45340.1 (Glycine max), 5'ss of exon 4
CAACCCAAAGGCCTTTTCCAGTGCAGATACAGCTTATGTCCTTGCTTATTCAGTCATAATGCTCAACACCGATGCACATAATCCAATGGTAAAAAATAAGgtatgt-----atcttattggc---taagtttttgtgta-atataccatagaca-gcctttggttctgttgtgatgtattaattaatgcag---------
 || |||||||||||||| ||||| || ||||| |||||||| || ||||| || |||||||| || || ||||| || ||||| ||||| || |||||||| ||      ||||||| |     ||| ||  |||  | ||||  | | || | |  |||||  ||  |  | |   ||  || ||             
TAATCCAAAGGCCTTTTCTAGTGCTGACACAGCATATGTCCTAGCCTATTCTGTTATAATGCTTAATACAGATGCTCACAATCCTATGGTGAAGAATAAGgtgtgctcacaatcttatagttctgtaaattgatgtacacatatggctttgatatgtttttggaccttgtaagttagtttttttcatttttagttcctgt

upper sequence: LOC_Os03g14260.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA01G34560.1 (Glycine max), 5'ss of exon 5
CAACCCAAAGGCCTTTTCCAGTGCAGATACAGCTTATGTCCTTGCTTATTCAGTCATAATGCTCAACACCGATGCACATAATCCAATGGTAAAAAATAAGgtatgtatcttattggctaagtttttgtgt-aatataccatagacagcctttggttctgttgtgatgtattaa-ttaatgcag------------------
 || |||||||||||||| ||||| || || || |||||||| || ||||| || |||||||| || || ||||| || ||||| ||||| || |||||||| ||      ||    ||  | | |   |  || ||| | | |  || ||    | | ||| ||  |  ||| ||| ||                     
TAATCCAAAGGCCTTTTCTAGTGCTGACACTGCATATGTCCTAGCCTATTCTGTTATAATGCTTAATACAGATGCTCACAATCCTATGGTGAAGAATAAGgtgtgctcacaatcttatagttctgtaaattgatgtac-acataaggctttgatatgttttgggaccttgtaagttagtgttttttcatttttagtccctg

upper sequence: LOC_Os03g14260.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA18G45360.1 (Glycine max), 5'ss of exon 3
CAACCCAAAGGCCTTTTCCAGTGCAGATACAGCTTATGTCCTTGCTTATTCAGTCATAATGCTCAACACCGATGCACATAATCCAATGGTAAAAAATAAGgta-----tgt--atcttattggctaagttt-------ttgtg-taata--taccatagacagcctttggttctgttgtgatgtattaattaatgcag
 || ||||| | |||||| ||||| |||||||| ||||||||||| ||||| || ||| |||| || |||||||| || ||||| ||||| ||||| |||||      |||  ||  ||   | | | |||       || || | ||   ||  ||| |     |  |||||| || || | |  | | | ||||||
TAATCCAAAAGTCTTTTCTAGTGCTGATACAGCATATGTCCTTGCATATTCTGTGATACTGCTTAATACCGATGCCCACAATCCTATGGTGAAAAACAAGgtgcagtctgtcaattctagaagttgattttcatatgattatgattatgattattatatatgtaatgaggttcttttttg-tttgctgagttatgcag

upper sequence: LOC_Os03g14260.2 (Oryza sativa), 5'ss of exon 4
lower sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 4
CAACCCAAAGGCCTTTTCCAGTGCAGATACAGCTTATGTCCTTGCTTATTCAGTCATAATGCTCAACACCGATGCACATAATCCAATGGTAAAAAATAAGgtatgtatctta-----ttggctaagt--ttttgtgtaatataccatagacagccttt------ggttctgttgtgatgtattaattaatgcag-----------------------------------------
|||||||||||  ||||| || || ||||| || |||||||| ||||| ||||||||  |||||||||| ||||||||||| || ||||| || |  ||||||  ||| | |     || ||| ||    ||| || |||    | |    |   | |      | |  ||||   |  |  | |||  |  |                                          
CAACCCAAAGGATTTTTCTAGCGCTGATACGGCATATGTCCTCGCTTACTCAGTCATTTTGCTCAACACAGATGCACATAACCCTATGGTGAAGAGCAAGgtacatatttgagctgtttcgcttagaagctttctgaaatccctcttgaggaatatcttaatacgatcttgtttgaagcttgtgattggtcaaacaaagtaactcattactaaatttttcaattacaacttgcag

upper sequence: LOC_Os03g14260.2 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 4
CAACCCAAAGGCCTTTTCCAGTGCAGATACAGCTTATGTCCTTGCTTATTCAGTCATAATGCTCAACACCGATGCACATAATCCAATGGTAAAAAATAAGgtatgtatcttattggctaagttt----ttgtgtaatataccatag-acagcctttggttctgttgtgatgtattaattaatgcag------------------
 || |||||||| ||  | |||||||| ||||| ||||||||||||||||| || || ||||| || |||||||| ||||| || ||||| || ||||||||||    || |     | | |||    || ||  || |   |||  | | | |   |   |  |||    ||||||||  |                      
TAATCCAAAGGCTTTCACTAGTGCAGACACAGCCTATGTCCTTGCTTATTCTGTTATTATGCTGAATACCGATGCTCATAACCCGATGGTTAAGAATAAGgtata---ctcaaaaatttaatttgaagttatgagatgtttaatatcataacttgctgaatttctgtttattattaatttttttttggtcattaaaatatgcag

upper sequence: LOC_Os03g14260.2 (Oryza sativa), 5'ss of exon 4
lower sequence: PP1S264_74V6.1 (Physcomitrella patens), 5'ss of exon 5
CAACCCAAAGGCCTTTTCCAGTGCAGATACAGCTTATGTCCTTGCTTATTCAGTCATAATGCTCAACACCGATGCACATAATCCAATGGTAAAAAATAAGgtatgtatcttattggctaagtttttgtgtaatataccatagacagcctttggttctgttgtgatg--tattaattaatgcag------------------
||| || ||||| ||   |||||||||||||||||| || |||||||| || || || |||||||| || ||||| || || || ||||| || |  |||||  ||    | ||| | |  |     ||   |  |   |  | |   ||    |  ||| || ||    |  | |  | |                    
CAATCCGAAGGCATTCAGCAGTGCAGATACAGCTTACGTTCTTGCTTACTCTGTGATCATGCTCAATACTGATGCTCACAACCCCATGGTCAAGACCAAGgtcagtgatctgttg-caatttcacactgcgttcaagtgtgcatatttttgctctgagttctgctgatcctagacttttacgatatactttggccttttcc

upper sequence: LOC_Os03g14260.2 (Oryza sativa), 5'ss of exon 4
lower sequence: PP1S11_55V6.1 (Physcomitrella patens), 5'ss of exon 5
CAACCCAAAGGCCTTTTCCAGTGCAGATACAGCTTATGTCCTTGCTTATTCAGTCATAATGCTCAACACCGATGCACATAATCCAATGGTAAAAAATAAGgtatgtatcttattggctaagttt-ttgtgtaatataccatagacagcctttggttctgttgtgatgtattaattaatgcag-------------------
||| || ||||||||    |||||||||||||| || || |||||||| || || || ||||| ||||||||||| || || || ||||| |||| ||||||  |||   | || |    |    ||| || |  |||    |   |    ||  | | |||   ||   |   |  ||  |                   
CAATCCGAAGGCCTTCAGTAGTGCAGATACAGCATACGTGCTTGCTTACTCTGTGATCATGCTTAACACCGATGCCCACAACCCTATGGTCAAAACTAAGgtcagtaatatgttagaatcgcgcattgcgtga-gtacgggtgcgtgtgcgtgtgtgtattgctttgctcttggttctgttgctcttacattgttgcgtta