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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGTCGTTCCACAACTACCGGATCTGGTCATTCCTCGGCCTCGTCATGACCACCTACACGGCCTGGTACCTCGCCGTCGCCTCCCTCATCCATGGCCAGgtagtacaacacaaaagcaccatctgttagcatgcagcatgcttgcatttctcgtctgaatagcgaggcgcatgcctgaacattattacattgcgttgtgctgaaaaaacacttgtgttttttgtatgaatatcag

Basic information

species Oryza sativa
transcript LOC_Os03g14080.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g14080.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G149481_T02 (Zea mays), 5'ss of exon 4
CCCGTCGTTCCACAACTACCGGATCTGGTCATTCCTCGGCCTCGTCATGACCACCTACACGGCCTGGTACCTCGCCGTCGCCTCCCTCATCCATGGCCAGgtagtacaacacaaaagcaccatctgttagcatgcagcatgcttgcatttctcgtctgaatagcgaggcgcatgcctgaacattattacattgcgttgtgctgaaaaaacacttgtgttttttgtatgaatatcag
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    | |  |   ||         ||  |||||   ||   || | |  | | ||    | | |   |  |||   ||  | |    |    || |||||    |    |||                     
CCCGTCGTTCCACAACTACCGGATCTGGTCGTTCCTGGGCCTCGTCATGACCACCTACACGGCGTGGTACCTCGCCGTCGCGTCCCTCATCCATGGCCAGgtacgcaagcgta---gcgttgaagcataatatgcattctgtgggcctgtggcctgtggcctgtgggtgaccggccgagacgatgt---gtgtgcttctgctgctctacttgttgcag------------------

upper sequence: LOC_Os03g14080.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA06G11540.1 (Glycine max), 5'ss of exon 5
CCCGTCGTTCCACAACTACCGGATCTGGTCATTCCTCGGCCTCGTCATGACCACCTACACGGCCTGGTACCTCGCCGTCGCCTCCCTCATCCATGGCCAGgtagtacaacacaaaagcaccatctgttagcatgcagcatgcttgcatttctcgtctgaatagcgaggcgcatgcctgaacat-tattacattgcgttgtgctgaaa--aaacacttgtgttttttgtatgaatatcag----------------
||| || |||||||||||| | |||||||||||| | |||||||| |||||||| ||||| || |||||  |  || | || ||||| | |||||||||||||  |  || | | |          | | ||| ||||||      |   |   ||  |||| | |   |  |||    |||| |  || | |  ||  |  ||     ||  | ||||||| ||   || |||||                   
CCCTTCTTTCCACAACTACAGAATCTGGTCATTCTTGGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGgtaaaaagactcgatatttaggagcctcaacat-cagcataaaattaaagcaaatc-aaataacaa--tgattgctaacacatgtgatataataagtattattgttgctaattatttgtgttcttca-attaatattctgtgtgtttctctaaag

upper sequence: LOC_Os03g14080.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA06G00690.1 (Glycine max), 5'ss of exon 4
CCCGTCGTTCCACAACTACCGGATCTGGTCATTCCTCGGCCTCGTCATGACCACCTACACGGCCTGGTACCTCGCCGTCGCCTCCCTCATCCATGGCCAGgtagta-caacacaaaagcaccatctgttagcatgcagcatgcttgcatttctcgtctgaatagcgaggcgcatgcctgaacattattacattgcgttgtgctgaaaaaacacttgtgttttttgtatgaatat-cag
||| || |||||||||||| | |||||||| || || |||||| |||||||||| ||||| || ||||||||| | || ||||| ||| | || ||||||||| || |||   | |    | |     ||  |||||  ||   | ||| | |  | |  |||   |   | ||   |  |  ||||||        | |  | || |  |  |  || | ||  ||||| | |  ||
CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACTGTTGCCTCTCTCCTTCACGGCCAGgtaataacaatttagatttgcaaataaataa-atgca-tatatatacatatat-atatatatatatatatgaattattatat-ttattagtggctactataat-aatatgcgatcttgatgttactatgattgtgtag

upper sequence: LOC_Os03g14080.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA04G00640.1 (Glycine max), 5'ss of exon 4
CCCGTCGTTCCACAACTACCGGATCTGGTCATTCCTCGGCCTCGTCATGACCACCTACACGGCCTGGTACCTCGCCGTCGCCTCCCTCATCCATGGCCAGgtagta-caacacaaaagcaccatctgttagc---atgcagcatgcttgcatttctcgtctgaatagcgaggcgcatgcctgaacattattacattgcgttgtgctgaaaaaac-acttgtgttttttgtatgaatatcag
||| || |||||||||||| | |||||||| || || |||||| |||||||||| ||||| || ||||||||| | || ||||| ||| | || ||||||||| ||  ||   | |    | |     ||     ||  |  || | | |  |  || | |||||    | |    |   ||   | ||| | | |  |   |  |||    || |  | || || | |||          
CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACAGTTGCCTCTCTCCTTCACGGCCAGgtaataataatttagatttgcaaataaataatcatatatattattcctactgtgatc-tatgaatcattatgtttcttagtggctactataataatatgcgatcttgatgttactatatatgattgt-gtag---------

upper sequence: LOC_Os03g14080.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT2G21050.1 (Arabidopsis thaliana), 5'ss of exon 4
CCCGTCGTTCCACAACTACCGGATCTGGTCATTCCTCGGCCTCGTCATGACCACCTACACGGCCTGGTACCTCGCCGTCGCCTCCCTCATCCATGGCCAGgtagtacaacacaaaagcaccatctgttagcatgcagcatgcttgcatttctcgtctgaatagcgaggcgcatgcctgaacattattacattgcgttgtgctgaaaaaacacttgtgttttttgtatgaatatcag
 || || |||||||||||| |||||||||| || || || ||| | |||||||| ||||| || ||||||||| || | |||||  || ||||||| ||||||       || |   |    | |  |   ||  ||  |    |  ||     |  |||||||  || | |||      | | |    | |           | |||                            
TCCTTCCTTCCACAACTACAGGATCTGGTCTTTTCTTGGACTCTTGATGACCACTTACACTGCTTGGTACCTCACCATTGCCTCTATCCTCCATGGACAGgta-------actagttctttctttaatctaat-tagtttcaacgagttaaagattagaatagct-ggtg-atgttgtggcttaaggggactcaaaaacatcaacaaagt--------------------------

upper sequence: LOC_Os03g14080.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 5'ss of exon 4
CCCGTCGTTCCACAACTACCGGATCTGGTCATTCCTCGGCCTCGTCATGACCACCTACACGGCCTGGTACCTCGCCGTCGCCTCCCTCATCCATGGCCAGgtagtacaacacaaaagcaccatctgttagcatgcagcatgcttgcatttctcgtctgaatagcgaggcgcatgcctgaacattattacattgcgttgtgctgaaaaaacacttgtgttttttgtatgaatatcag
 || || |||||||||||| | |||||||| ||| | ||| |  |||||||||| ||||| |||||||||||| | || || |||||| |||||||||||||| ||    ||| |     |||        ||     |  | |    |  |    | | ||         ||   |  |  |||||   ||   |  |  ||   |                             
TCCTTCATTCCACAACTACAGAATCTGGTCCTTCTTGGGCTTGATCATGACCACTTACACTGCCTGGTACCTCACTGTTGCATCCCTCCTCCATGGCCAGgtactat---acatatatctcattcaaccaaatatccaaaacatatgatattaaaattagtaaatgattttatttatttat-ttatttatttatttgttaatgggcag----------------------------