1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTCAGCTGGCTCTGAAGCATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAGgtatgataacttgtatggtacctttttatatgagtcgcggttgatgatgctggcctaatctttcag
species | Oryza sativa |
transcript | LOC_Os03g13970.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAG CCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAAEST: gi|33657883|gb|CF280497.1|CF280497
genomic: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAGgtatgataac ... aatctttcagCCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAA
EST: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAG CCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAAEST: gi|33654150|gb|CF276764.1|CF276764
genomic: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAGgtatgataac ... aatctttcagCCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAA
EST: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAG CCCTGTGAAATAC-ACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAAEST: gi|58663975|gb|CK052661.1|CK052661
genomic: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAGgtatgataac ... aatctttcagCCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAA
EST: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAG CCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAACAGCTGAAEST: gi|88358175|gb|CI605100.1|CI605100
genomic: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAGgtatgataac ... aatctttcagCCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAA
EST: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAG CCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAAEST: gi|33681541|gb|CF309780.1|CF309780
genomic: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAGgtatgataac ... aatctttcagCCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAA
EST: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAG CCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAAEST: gi|88434013|gb|CI586891.1|CI586891
genomic: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAGgtatgataac ... aatctttcagCCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAA
EST: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAG CC-TGTGAAATACGAGAAGAAEST: gi|33654616|gb|CF277230.1|CF277230
genomic: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAGgtatgataac ... aatctttcagCCCTGTGAAATACGACAAGAA
EST: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAG CCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAAEST: gi|2309803|gb|C25958.1|C25958
genomic: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAGgtatgataac ... aatctttcagCCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAA
EST: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAG CCCTGTGAAATACGNCAAGAAAEST: gi|33681744|gb|CF309983.1|CF309983
genomic: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAGgtatgataac ... aatctttcagCCCTGTGAAATACGACAAGAAA
EST: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAG CCCTGTGAAATACGACAAGANAGTTTTGGAAACAATCGGGAAAAAGCTGAAEST: gi|88425160|gb|CI564677.1|CI564677
genomic: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAGgtatgataac ... aatctttcagCCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAA
EST: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAG CCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTEST: gi|163926719|gb|EG713735.1|EG713735
genomic: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAGgtatgataac ... aatctttcagCCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCT
EST: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAG CCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAAEST: gi|218488524|gb|FG963297.1|FG963297
genomic: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAGgtatgataac ... aatctttcagCCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAA
EST: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAG CCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAA
genomic: CATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAGgtatgataac ... aatctttcagCCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAAGCAAATTTGGCTGCAGCAATTCAGGTTGCTCAGCTGGCTCTGAAGCATCGCCAGAATAAGAGGCAGCAACAGCGGATTATAGCTTTTATTGGAAGgtatgataacttgtatggtacctttttatatgagtcgcggttgatgatgctggcctaatctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG