1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
AGTTTTCTTTGCAGTAACAAAGCTGTTCCAGTCCAAGGATGCTGGTCTTAGGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAGgtcaaaggaaactgtttttagatccatgaattataacttgtttcttgtattgtcattctaaattgtttgaattttacacaacag
species | Oryza sativa |
transcript | LOC_Os03g12590.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGCGGGTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAG GTTATCATAGTCACAAGCTCATTAATGAAAGATATGAACAGCAAGACGGATEST: gi|88454333|gb|CI569905.1|CI569905
genomic: GGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAGgtcaaaggaa ... tacacaacagGTTATCATAGTCACAAGCTCATTAATGAAAGATATGAACAGCAAGACGGAT
EST: GGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAG GTTATCATAGTCACAAGCTCATTAATGAAAGATATGAACAGCAAGACGGATEST: gi|88333728|gb|CI643760.1|CI643760
genomic: GGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAGgtcaaaggaa ... tacacaacagGTTATCATAGTCACAAGCTCATTAATGAAAGATATGAACAGCAAGACGGAT
EST: GGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAG GTTATCATAGTCACAAGCTCATTAATGAAAGATAEST: gi|88405887|gb|CI591282.1|CI591282
genomic: GGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAGgtcaaaggaa ... tacacaacagGTTATCATAGTCACAAGCTCATTAATGAAAGATA
EST: GGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAG GTTATCATAGTCACAAGCTCATTAATGAAEST: gi|88328220|gb|CI651227.1|CI651227
genomic: GGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAGgtcaaaggaa ... tacacaacagGTTATCATAGTCACAAGCTCATTAATGAA
EST: GGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAG GTTATCATAGTCACAAGCTCATTAATGAAAGATEST: gi|88311189|gb|CI570263.1|CI570263
genomic: GGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAGgtcaaaggaa ... tacacaacagGTTATCATAGTCACAAGCTCATTAATGAAAGAT
EST: GGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAG GTTATCATAGTCACAAGCTCATTAATGAAAGATATGAACAGCAAGACGGATEST: gi|88370130|gb|CI585135.1|CI585135
genomic: GGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAGgtcaaaggaa ... tacacaacagGTTATCATAGTCACAAGCTCATTAATGAAAGATATGAACAGCAAGACGGAT
EST: GGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAG GTTATCATAGTCACAAGCTCATTAATGAAAGATATGAACAGCAAGACGGATEST: gi|88310289|gb|CI659079.1|CI659079
genomic: GGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAGgtcaaaggaa ... tacacaacagGTTATCATAGTCACAAGCTCATTAATGAAAGATATGAACAGCAAGACGGAT
EST: GGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAG GTTATCATAGTCACAAGCTCATTAATGA
genomic: GGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAGgtcaaaggaa ... tacacaacagGTTATCATAGTCACAAGCTCATTAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTTTCTTTGCAGTAACAAAGCTGTTCCAGTCCAAGGATGCTGGTCTTAGGCGGCTGGTGTATTTAATGATCAAAGAGCTTTCACCATCATCAGATGAGgtcaaaggaaactgtttttagatccatgaattataacttgtttcttgtattgtcattctaaattgtttgaattttacacaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG